View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_low_2 (Length: 472)

Name: NF0304_low_2
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_low_2
NF0304_low_2
[»] chr5 (8 HSPs)
chr5 (92-472)||(3715587-3715965)
chr5 (233-367)||(21022897-21023031)
chr5 (250-372)||(7212288-7212410)
chr5 (245-372)||(26636819-26636946)
chr5 (276-372)||(6167886-6167982)
chr5 (252-372)||(27021727-27021847)
chr5 (240-372)||(34255169-34255301)
chr5 (233-312)||(34255233-34255312)
[»] chr6 (2 HSPs)
chr6 (233-367)||(26391833-26391968)
chr6 (268-372)||(24265505-24265609)
[»] chr8 (12 HSPs)
chr8 (243-367)||(34576120-34576241)
chr8 (267-348)||(33059840-33059921)
chr8 (268-372)||(33058612-33058716)
chr8 (243-367)||(34575334-34575455)
chr8 (244-320)||(4937530-4937606)
chr8 (240-371)||(13393810-13393941)
chr8 (245-372)||(19735721-19735848)
chr8 (245-372)||(32549702-32549829)
chr8 (301-371)||(33057813-33057882)
chr8 (267-348)||(33052804-33052885)
chr8 (304-348)||(8688378-8688422)
chr8 (240-372)||(32549698-32549830)
[»] chr7 (4 HSPs)
chr7 (233-285)||(22779207-22779259)
chr7 (234-288)||(46816465-46816519)
chr7 (247-340)||(4047942-4048035)
chr7 (240-372)||(29235819-29235951)
[»] chr1 (1 HSPs)
chr1 (250-318)||(39724696-39724764)
[»] chr4 (4 HSPs)
chr4 (245-370)||(5801829-5801953)
chr4 (245-282)||(23292372-23292409)
chr4 (287-346)||(29910596-29910655)
chr4 (240-369)||(54569594-54569723)
[»] chr3 (4 HSPs)
chr3 (304-372)||(30672519-30672587)
chr3 (233-348)||(7138385-7138500)
chr3 (245-348)||(38074635-38074738)
chr3 (240-342)||(30672515-30672617)
[»] chr2 (3 HSPs)
chr2 (302-371)||(11532963-11533032)
chr2 (335-372)||(36554248-36554285)
chr2 (304-372)||(41190821-41190889)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 92 - 472
Target Start/End: Original strand, 3715587 - 3715965
Alignment:
Q  92 tgttgatgaagtcactgagtttactttgatgtgcctctaggacatcccaatagcacactacatagcgactaaatgtattagttgattgggggttacactc 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3715587 tgttgatgaagtcgctgagtttactttgatgtgcctctaggacatcccaatagcacactacatagcgactaaatgtattagttgattgggggttacactc 3715686  T
Q  192 agtccaagtacataatatgtggnnnnnnngaatcaatttcgtacttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaattg 291  Q
    |||||| |||||||||||||||       |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3715687 agtcca-gtacataatatgtgggaaaaa-gaatcaattttgtacttcacccgatcacgtttataagcaaatattcctttttcacattcattaaacaattg 3715784  T
Q  292 ttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatgacgataaaggggtacagaaca 391  Q
    |||||||| ||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3715785 ttgtatatggattatattatagttgagatacatcaactattgaataaatctaaaaaagtaaaatttgcttataaatatgacgataaaggggtacggaaca 3715884  T
Q  392 agtgtaaatatatttcatattatcgtacaatcataatcattttttaactaaattaattttgatctttaaatcattaaaagt 472  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3715885 agtgtaaatatatttcatattatcgtataatcataatcattttttaactaaattaattttgatccttaaatcattaaaagt 3715965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 367
Target Start/End: Original strand, 21022897 - 21023031
Alignment:
Q  233 tacttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctatt 332  Q
    |||||||||| |||| |||||||||||||||||   |||||||||||||| || ||||||| ||| | || ||||| ||||||||||| ||||| |||||    
T  21022897 tacttcatcctatcaaatttataagcaaatattttcttttcacattcatttaataattgttatatctggactatatcatagttcaaatacatcaactatt 21022996  T
Q  333 gaataaatctaaaaaagtaaaatttgcttataaat 367  Q
     ||| ||||||||||| ||||||||||||||||||    
T  21022997 caatgaatctaaaaaaataaaatttgcttataaat 21023031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 372
Target Start/End: Original strand, 7212288 - 7212410
Alignment:
Q  250 tttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaag 349  Q
    ||||||||||| | ||||||||||| |||||||||| || || ||||| |||||||||||||  || | || |||||  |||| ||| |||||||||||     
T  7212288 tttataagcaatttttcctttttcagattcattaaataagtgatgtatctagattatattatgttttagatacatcaattatttaatgaatctaaaaaaa 7212387  T
Q  350 taaaatttgcttataaatatgac 372  Q
    ||||| ||| |||||||| ||||    
T  7212388 taaaagttgtttataaatgtgac 7212410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 26636819 - 26636946
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaa 344  Q
    |||||||||||||||| | || |||||||| |||||||||| || || ||||| || |  ||| ||||||| | || |||||| |||| ||||||||| |    
T  26636819 tcacatttataagcaacttttactttttcagattcattaaataaatgatgtatctaaaacataatatagtttagatacatcacttatttaataaatctga 26636918  T
Q  345 aaaagtaaaatttgcttataaatatgac 372  Q
     |||  |||| |||||||||||| ||||    
T  26636919 caaaacaaaagttgcttataaatgtgac 26636946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 6167982 - 6167886
Alignment:
Q  276 attcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatgac 372  Q
    |||||||||| ||  | ||||| |||| |||| ||||||||| || |||| | |||| ||| |||||||||||| |||| || ||||||||||||||    
T  6167982 attcattaaataaccgatgtatctagaatataatatagttcagatacatctcttatttaattaatctaaaaaagaaaaaattacttataaatatgac 6167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 372
Target Start/End: Original strand, 27021727 - 27021847
Alignment:
Q  252 tataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaagta 351  Q
    |||||| || ||||||||||||| |||||||||| || ||| || | | || ||||||||| |||| || ||| |  |||| |||||||||| |||| ||    
T  27021727 tataagtaactattcctttttcagattcattaaataaatgtggtttctggactatattatatttcagatacataagttatttaataaatctataaaatta 27021826  T
Q  352 aaatttgcttataaatatgac 372  Q
    ||| || ||||||||| ||||    
T  27021827 aaagttacttataaatgtgac 27021847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 34255169 - 34255301
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    ||||||||||| ||||||||| | || |||||| |  |||||||||  | || | ||| | || |||| ||||||  | || |||||| |||| ||| ||    
T  34255169 tccgatcacatatataagcaacttttgcttttttaggttcattaaatcactgatatatctggaatataatatagtctagatacatcacttatttaatgaa 34255268  T
Q  340 tctaaaaaagtaaaatttgcttataaatatgac 372  Q
    ||||||||||||||| |||||||||||| ||||    
T  34255269 tctaaaaaagtaaaagttgcttataaatgtgac 34255301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 34255312 - 34255233
Alignment:
Q  233 tacttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattata 312  Q
    |||||| |||| |||||||||||||||| | || |||||| | |||||||||| || || ||||| |||| |||||||||    
T  34255312 tacttcctccggtcacatttataagcaacttttacttttttagattcattaaataagtgatgtatctagactatattata 34255233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 367
Target Start/End: Complemental strand, 26391968 - 26391833
Alignment:
Q  233 tacttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctatt 332  Q
    |||||||||| |||| |||||||||||||||||   |||||||||||||| || || |||| ||| | || ||||| |||||||| || ||||| |||||    
T  26391968 tacttcatcctatcatatttataagcaaatattttcttttcacattcatttaataagtgttatatttggactatatcatagttcagatacatcaactatt 26391869  T
Q  333 gaataaatctaa-aaaagtaaaatttgcttataaat 367  Q
     ||| ||||||| ||||||||||||| |||||||||    
T  26391868 caatgaatctaaaaaaagtaaaatttacttataaat 26391833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 24265505 - 24265609
Alignment:
Q  268 tttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaat 367  Q
    ||||||| |||||||||| || || ||||||| || ||||||||| |||| || |||||  |||| |||||||||||||||| |||| ||||||||||||    
T  24265505 tttttcagattcattaaataactgatgtatatggactatattataattcagatacatcaattatttaataaatctaaaaaagaaaaagttgcttataaat 24265604  T
Q  368 atgac 372  Q
     ||||    
T  24265605 ctgac 24265609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 34576120 - 34576241
Alignment:
Q  243 gatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatct 342  Q
    ||||||||||||||| |||| |||||||| ||||||||||||| ||||||| ||| | || |||||||||||||| || ||| |  |||| ||||||| |    
T  34576120 gatcacatttataagtaaattttcctttt-cacattcattaaataattgtt-tatttggactatattatagttcagatacataaa-tattcaataaattt 34576216  T
Q  343 aaaaaagtaaaatttgcttataaat 367  Q
     |||| |||||||||||||||||||    
T  34576217 gaaaaggtaaaatttgcttataaat 34576241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 33059840 - 33059921
Alignment:
Q  267 ctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaa 348  Q
    |||||||| |||||||||| ||||| ||||| | || ||||||||| |||| ||||||||  |||| |||||||||||||||    
T  33059840 ctttttcagattcattaaataattgatgtatctggactatattataattcagatgcatcaattatttaataaatctaaaaaa 33059921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 33058612 - 33058716
Alignment:
Q  268 tttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaat 367  Q
    ||||||| |||||||||| ||||| ||||| |  | ||||||||| |||| ||||||||  |||| |||||||||||||||  |||| ||| ||||||||    
T  33058612 tttttcagattcattaaataattgatgtatctgaactatattataattcagatgcatcaattatttaataaatctaaaaaaacaaaagttgtttataaat 33058711  T
Q  368 atgac 372  Q
     ||||    
T  33058712 ctgac 33058716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 34575334 - 34575455
Alignment:
Q  243 gatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatct 342  Q
    ||||||||||||||  |||| |||||||| ||||||||||||| ||||||| ||| | || |||||||||||||| || ||| |  |||| ||||||| |    
T  34575334 gatcacatttataaataaattttcctttt-cacattcattaaataattgtt-tatttggactatattatagttcagatacat-aaatattcaataaattt 34575430  T
Q  343 aaaaaagtaaaatttgcttataaat 367  Q
     |||| ||||||||| |||||||||    
T  34575431 gaaaaggtaaaattttcttataaat 34575455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 4937530 - 4937606
Alignment:
Q  244 atcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaat 320  Q
    |||||||||||||||||||  | |||||| | |||||||||| ||||  |||||||| | ||||||||| |||||||    
T  4937530 atcacatttataagcaaattgtacttttttagattcattaaataatttatgtatataaactatattatatttcaaat 4937606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 13393941 - 13393810
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    |||||| |||||||||||||| | ||| ||||||| |||||||| | || ||  |||| |||| ||||||||  || | || | |||| |||||||| ||    
T  13393941 tccgattacatttataagcaacttttcttttttcaaattcattagataaatgacgtatctagactatattatgttttagatacctcacttattgaatgaa 13393842  T
Q  340 tctaaaaaagtaaaatttgcttataaatatga 371  Q
    ||| ||||||| ||| | |||| |||||||||    
T  13393841 tctgaaaaagttaaagtcgcttgtaaatatga 13393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 19735721 - 19735848
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaa 344  Q
    |||||||||||||||| | || |||||| | |||||||||||||||| ||||| | || | || ||||||    || |||||| |||| ||| ||| | |    
T  19735721 tcacatttataagcaacttttgcttttttagattcattaaacaattgatgtatctggaatgtactatagtcttgatacatcacttatttaatgaatatga 19735820  T
Q  345 aaaagtaaaatttgcttataaatatgac 372  Q
    ||| |||||| |||||||||||| ||||    
T  19735821 aaaggtaaaagttgcttataaatgtgac 19735848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 372
Target Start/End: Complemental strand, 32549829 - 32549702
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaa 344  Q
    |||||||||||||||| | || |||||| | |||||||||| ||  | ||||| | || ||||||||| | || || |||||  |||| ||| |||||||    
T  32549829 tcacatttataagcaacttttgctttttgagattcattaaataaacgatgtatctggactatattatattccagatacatcagttatttaatgaatctaa 32549730  T
Q  345 aaaagtaaaatttgcttataaatatgac 372  Q
    ||||| |||| |||| ||||||| ||||    
T  32549729 aaaagcaaaagttgcgtataaatgtgac 32549702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 33057813 - 33057882
Alignment:
Q  301 gattatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatga 371  Q
    |||||||||||| |||| ||||||||  |||| |||||||||||||||  |||| ||| ||||||||||||    
T  33057813 gattatattataattcagatgcatcaattatttaataaatctaaaaaa-caaaagttgtttataaatatga 33057882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 33052804 - 33052885
Alignment:
Q  267 ctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaaaa 348  Q
    |||||||| | | |||||| ||||| | ||| | || ||||||||| |||||||||||||  |||| |||||||||||||||    
T  33052804 ctttttcagaattattaaataattgatctatttggactatattataattcaaatgcatcaattatttaataaatctaaaaaa 33052885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 8688378 - 8688422
Alignment:
Q  304 tatattatagttcaaatgcatcacctattgaataaatctaaaaaa 348  Q
    |||||||||| |||||| |||||| |||| |||||||||||||||    
T  8688378 tatattatagatcaaatacatcacttattcaataaatctaaaaaa 8688422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 32549698 - 32549830
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    |||| ||||||||||| |||| | || |||||| | |||||||||| || || ||||| | || |||| |||||| || || ||||   |||| ||| ||    
T  32549698 tccggtcacatttatacgcaacttttgcttttttagattcattaaataactgatgtatctggaatataatatagtccagatacatcgtttatttaatgaa 32549797  T
Q  340 tctaaaaaagtaaaatttgcttataaatatgac 372  Q
    ||| |||||| |||| |||||||||||| ||||    
T  32549798 tctcaaaaagcaaaagttgcttataaatgtgac 32549830  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 22779259 - 22779207
Alignment:
Q  233 tacttcatccgatcacatttataagcaaatattcctttttcacattcattaaa 285  Q
    |||| |||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  22779259 tactccatccggtcacatttataagcaaattttcctttttcagattcattaaa 22779207  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 46816519 - 46816465
Alignment:
Q  234 acttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaa 288  Q
    ||||| ||||||||||||||||| ||| | || |||||||| |||||||||||||    
T  46816519 acttcctccgatcacatttataaacaacttttactttttcagattcattaaacaa 46816465  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 4048035 - 4047942
Alignment:
Q  247 acatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaat 340  Q
    |||||||||| ||| | || |||||||| |||||||||||| | | ||||| |  |||||| |||||||||||| |||||  |||| |||||||    
T  4048035 acatttataaacaattttttctttttcagattcattaaacattagatgtatctgaattataatatagttcaaatacatcaattatttaataaat 4047942  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 29235951 - 29235819
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    |||| |||||||||||||||| | || |||||| | |||||||||| || |  | ||| |||| ||||||||  || | || ||| || |||| ||| ||    
T  29235951 tccggtcacatttataagcaacttttgctttttgagattcattaaataagtaatatatctagactatattatgttttagatacataacttatttaatgaa 29235852  T
Q  340 tctaaaaaagtaaaatttgcttataaatatgac 372  Q
    ||||||||||||||| ||  |||||||| ||||    
T  29235851 tctaaaaaagtaaaaattatttataaatgtgac 29235819  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 39724696 - 39724764
Alignment:
Q  250 tttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaa 318  Q
    |||||||| |||||| || ||||||||||||||||| ||||||||||| | |  |||||||||||||||    
T  39724696 tttataagtaaatatcccattttcacattcattaaataattgttgtatctcggctatattatagttcaa 39724764  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 5801829 - 5801953
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaa 344  Q
    ||||||||||||  ||||||| |||||||| |||||||||| ||||| ||| |||  | |||| ||||| || ||  |||||  |||| ||| ||||| |    
T  5801829 tcacatttataattaaatatttctttttcatattcattaaaaaattgatgtttatgaactatagtatag-tctaaaacatcaattattaaatgaatctga 5801927  T
Q  345 aaaagtaaaatttgcttataaatatg 370  Q
    |||| ||| |||||||||||||||||    
T  5801928 aaaaataatatttgcttataaatatg 5801953  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 23292372 - 23292409
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcatt 282  Q
    |||||||||||||||||||||||||||||| |||||||    
T  23292372 tcacatttataagcaaatattcctttttcagattcatt 23292409  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 29910655 - 29910596
Alignment:
Q  287 aattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaaaa 346  Q
    ||||| ||||| |||  |||||||||| |||||||||||| ||||| |||||||||||||    
T  29910655 aattgatgtatctagtatatattataggtcaaatgcatcaactattcaataaatctaaaa 29910596  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 369
Target Start/End: Original strand, 54569594 - 54569723
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    |||| |||||||||||||||| | || ||||| ||  ||||||||| ||||  ||||| ||   |||| ||||||  | || |||||| ||||  || ||    
T  54569594 tccggtcacatttataagcaacttttgcttttgcaggttcattaaataattaatgtatctaagatataatatagtctagatacatcacttatttcatgaa 54569693  T
Q  340 tctaaaaaagtaaaatttgcttataaatat 369  Q
    ||| ||||||||||| ||||||||||||||    
T  54569694 tctgaaaaagtaaaagttgcttataaatat 54569723  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 30672587 - 30672519
Alignment:
Q  304 tatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatgac 372  Q
    ||||||||| |||| || |||||  |||| ||| |||||||||| | ||||||||||||||||||||||    
T  30672587 tatattataattcagatacatcaattatttaatgaatctaaaaatggaaaatttgcttataaatatgac 30672519  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 7138385 - 7138500
Alignment:
Q  233 tacttcatccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctatt 332  Q
    ||||||| ||| ||| |||||||||||| | ||||||||||| |||||||||| ||  | ||||| | ||||||| ||||||  |||| |||||  ||||    
T  7138385 tacttcaaccggtcatatttataagcaacttttcctttttcaaattcattaaataaccgatgtatctcgattataatatagtctaaatacatcagttatt 7138484  T
Q  333 gaataaatctaaaaaa 348  Q
     ||| ||||| |||||    
T  7138485 taatgaatctgaaaaa 7138500  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 38074738 - 38074635
Alignment:
Q  245 tcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaatctaa 344  Q
    |||||||||||| ||| | || | |||||| |||||||||| || |  ||||| || |||||| |||||||||||| |||||  |||| |||| ||||||    
T  38074738 tcacatttataaacaactttttcattttcagattcattaaataacttatgtatctaaattataatatagttcaaatacatcaattatttaatatatctaa 38074639  T
Q  345 aaaa 348  Q
    ||||    
T  38074638 aaaa 38074635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 30672515 - 30672617
Alignment:
Q  240 tccgatcacatttataagcaaatattcctttttcacattcattaaacaattgttgtatatagattatattatagttcaaatgcatcacctattgaataaa 339  Q
    |||| ||| |||||||||||||| |||| |||| | |||||||||| ||||| ||||| |  |||||| |||||| |||||  ||||  |||| ||||||    
T  30672515 tccggtcatatttataagcaaattttccatttttagattcattaaataattgatgtatctgaattataatatagtccaaatatatcagttatttaataaa 30672614  T
Q  340 tct 342  Q
    |||    
T  30672615 tct 30672617  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 11532963 - 11533032
Alignment:
Q  302 attatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatga 371  Q
    ||||||||||| |||| || |||||  ||||  || ||||||||||| ||||| ||||||||||||||||    
T  11532963 attatattatatttcagatacatcaattattttatgaatctaaaaaaataaaaattgcttataaatatga 11533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 36554285 - 36554248
Alignment:
Q  335 ataaatctaaaaaagtaaaatttgcttataaatatgac 372  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  36554285 ataaatttaaaaaagtaaaatttgcttataaatgtgac 36554248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 41190889 - 41190821
Alignment:
Q  304 tatattatagttcaaatgcatcacctattgaataaatctaaaaaagtaaaatttgcttataaatatgac 372  Q
    ||||||||||||||||| |||||  ||||  |||||||| |||||| || |||  ||||||||||||||    
T  41190889 tatattatagttcaaatacatcaattattcgataaatcttaaaaagcaatattgacttataaatatgac 41190821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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