View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_low_6 (Length: 386)

Name: NF0304_low_6
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_low_6
NF0304_low_6
[»] chr7 (9 HSPs)
chr7 (61-374)||(37996785-37997096)
chr7 (250-374)||(2947551-2947672)
chr7 (250-374)||(6484590-6484716)
chr7 (320-374)||(1483977-1484031)
chr7 (250-374)||(33142951-33143071)
chr7 (322-374)||(47490772-47490824)
chr7 (321-354)||(12653789-12653822)
chr7 (321-354)||(37625707-37625740)
chr7 (32-61)||(37996739-37996768)
[»] scaffold0015 (1 HSPs)
scaffold0015 (250-374)||(34923-35046)
[»] chr8 (9 HSPs)
chr8 (250-374)||(2707636-2707758)
chr8 (320-374)||(37784964-37785018)
chr8 (322-374)||(35971172-35971224)
chr8 (322-374)||(7217736-7217788)
chr8 (250-301)||(35971098-35971149)
chr8 (250-299)||(31128172-31128221)
chr8 (250-301)||(37784896-37784947)
chr8 (250-299)||(40225432-40225481)
chr8 (321-354)||(45274990-45275023)
[»] chr3 (2 HSPs)
chr3 (250-370)||(50036391-50036509)
chr3 (320-354)||(30593771-30593805)
[»] chr2 (5 HSPs)
chr2 (250-374)||(23989355-23989479)
chr2 (322-374)||(29101058-29101110)
chr2 (210-246)||(12198060-12198096)
chr2 (245-299)||(16492966-16493020)
chr2 (250-299)||(5852908-5852957)
[»] chr5 (5 HSPs)
chr5 (249-306)||(41197169-41197226)
chr5 (320-374)||(41197093-41197147)
chr5 (322-374)||(35470840-35470891)
chr5 (250-301)||(35470769-35470820)
chr5 (250-299)||(43067070-43067119)
[»] chr4 (7 HSPs)
chr4 (250-374)||(56396569-56396691)
chr4 (320-374)||(6231106-6231160)
chr4 (60-111)||(39467535-39467586)
chr4 (250-298)||(6231194-6231242)
chr4 (210-246)||(39466545-39466581)
chr4 (249-299)||(25644199-25644249)
chr4 (168-205)||(39467490-39467527)
[»] chr6 (3 HSPs)
chr6 (250-374)||(26419854-26419982)
chr6 (322-374)||(14800547-14800599)
chr6 (250-302)||(14800623-14800675)
[»] chr1 (9 HSPs)
chr1 (251-306)||(16264789-16264844)
chr1 (320-374)||(49304736-49304790)
chr1 (320-374)||(16264716-16264770)
chr1 (250-301)||(49304814-49304865)
chr1 (249-299)||(24982195-24982245)
chr1 (250-299)||(3898942-3898991)
chr1 (250-299)||(26441482-26441531)
chr1 (321-354)||(46210517-46210550)
chr1 (321-354)||(47139591-47139624)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 61 - 374
Target Start/End: Original strand, 37996785 - 37997096
Alignment:
Q  61 agaggaaatcctactgtaacgttctcattctctcccttatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt 160  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996785 agaggaaatcctactgtaacgttctcattctctccctcatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt 37996884  T
Q  161 ctggtgaaatcttatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996885 ctggtgaaatcctatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta 37996984  T
Q  261 cggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgcttgaaaacttgc 360  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||             | |||||||||||||||||||||||||||||||||||||      
T  37996985 cggtacatgacctcaatgggtctcctatcgtaggtgacttgtcttt--tttttttttttataaaattgatgtcaaccattggatgtgcttgaaaactttt 37997082  T
Q  361 gaagaccatagtat 374  Q
    ||||||||||||||    
T  37997083 gaagaccatagtat 37997096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 2947672 - 2947551
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||    
T  2947672 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt---ttttttttttacaaaattgatgtcaaccattggatgtgct 2947576  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||||||||||||    
T  2947575 tgaaaacttttgaagaccatagtat 2947551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 6484716 - 6484590
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt--cnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtg 347  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||  |            ||||||||||||||||| ||||||||||    
T  6484716 ggctcaagctacggtacatgacctcaatggatctcctaccgtaggtgacttgactttttctttcttttttttacaaaattgatgtcaactattggatgtg 6484617  T
Q  348 cttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||  ||||||||||||||    
T  6484616 cttgaaaacttttgaagaccatagtat 6484590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 1483977 - 1484031
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1483977 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtat 1484031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 33143071 - 33142951
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||||             | ||||||||||||||||||| ||||||||    
T  33143071 ggctaaggctacggtacatgacctcgatgggtcttctaccgtaggtgacttgacttt----tttttttttataaaattgatgtcaaccatttgatgtgct 33142976  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||||||||||||    
T  33142975 tgaaaacttttgaagaccatagtat 33142951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 47490772 - 47490824
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    ||||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  47490772 aaaattgatgtcaaccattagatgtgcttaaaaacttttgaagaccatagtat 47490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 12653789 - 12653822
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  12653789 caaaattgatgtcaaccattggatgtacttgaaa 12653822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 37625707 - 37625740
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  37625707 caaaattgatgtcaaccattggatgtacttgaaa 37625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 37996739 - 37996768
Alignment:
Q  32 aggaagacacggtgcatgcaattgttttta 61  Q
    ||||||||||||||||||||||||||||||    
T  37996739 aggaagacacggtgcatgcaattgttttta 37996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 34923 - 35046
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||             ||||||||||||||||||||||||||||||    
T  34923 ggctcaggctaccgtacatgacttcaatgggtctcctaccgtaagtgacttgacttt-ttttttttttttacaaaattgatgtcaaccattggatgtgct 35021  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||||||||||||    
T  35022 tgaaaacttttgaagaccatagtat 35046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 2707758 - 2707636
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||             ||||||||||||||||||||||||||||||    
T  2707758 ggctcaagctacggtacatgacctcaatgggtctcctaccgtaggtgacttgatttt--ttattttttttacaaaattgatgtcaaccattggatgtgct 2707661  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||||||||||||    
T  2707660 tgaaaacttttgaagaccatagtat 2707636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 37784964 - 37785018
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37784964 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtat 37785018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 35971172 - 35971224
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  35971172 aaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtat 35971224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 7217788 - 7217736
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    ||||||| |||||| ||||||||||||||||||||||  ||||||||||||||    
T  7217788 aaaattgttgtcaatcattggatgtgcttgaaaacttttgaagaccatagtat 7217736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35971098 - 35971149
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||| |||||||||||| |||| ||| |||||||    
T  35971098 ggctcaggctacggtacatgacctcaatgggtctcataccatagatgacttg 35971149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 31128221 - 31128172
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||    
T  31128221 ggcttaggctacggtaggagacatcaatgggtctcctaccgtaggtgact 31128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 37784896 - 37784947
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||  | |||| |||||||||| |||||||||||    
T  37784896 ggctcaggctacggtacatgatcttaatgagtctcctaccataggtgacttg 37784947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 40225432 - 40225481
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  40225432 ggctctggctacggtaggcgacctcaatgggtctcctaccgtaggtgact 40225481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 45275023 - 45274990
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  45275023 caaaattgatgtcaaccattggatgtacttgaaa 45274990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 50036509 - 50036391
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||             ||||||||||||||||| ||||||||||||    
T  50036509 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt--tttttttttttacaaaattgatgtcaactattggatgtgct 50036412  T
Q  350 tgaaaacttgcgaagaccata 370  Q
    |||||||||  ||||||||||    
T  50036411 tgaaaactttagaagaccata 50036391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 30593771 - 30593805
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    ||||||||||||||||||||||||||| |||||||    
T  30593771 acaaaattgatgtcaaccattggatgtacttgaaa 30593805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 23989479 - 23989355
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||    
T  23989479 ggctcaggctacggtaaatggcctcaatgggtctcctaccgtaggtgacttgacttttttttttttttttacaaaattgatgtcaaccattggatgtgct 23989380  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||| ||||||||    
T  23989379 tgaaaacttttgaagatcatagtat 23989355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 29101110 - 29101058
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  29101110 aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtat 29101058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 12198060 - 12198096
Alignment:
Q  210 aattgttaaactcttcaaaagagtttgaaatatgctt 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  12198060 aattgttaaactcttcaaaagagtttgaaatatgctt 12198096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 16492966 - 16493020
Alignment:
Q  245 tttgcggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  16492966 tttgtggctctggctacggtatgcgacctcaatgggtctcctaccgtaggtgact 16493020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 5852908 - 5852957
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  5852908 ggctccggctacggtaggcgacttcaatgggtctcctaccgtaggtgact 5852957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 41197226 - 41197169
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  41197226 cggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt 41197169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 41197147 - 41197093
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  41197147 acaaaattgatgtcaaccattggatgtgtttgaaaacttttgaagaccatagtat 41197093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 35470840 - 35470891
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  35470840 aaaattgatgtcaaccattgg-tgtgcttgaaaacttttgaagaccatagtat 35470891  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35470769 - 35470820
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||  ||||| ||||||||| | |||||||||||    
T  35470769 ggctcaggctacggtacatgatctcaataggtctcctaacataggtgacttg 35470820  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 43067070 - 43067119
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  43067070 ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 43067119  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 56396691 - 56396569
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||||||||  |||             |||||| |||||||||||||||||||||||    
T  56396691 ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgacttgatttt--tttttttttttacaaaactgatgtcaaccattggatgtgct 56396594  T
Q  350 tgaaaacttgcgaagaccatagtat 374  Q
    |||||||||  ||||||||||||||    
T  56396593 tgaaaacttttgaagaccatagtat 56396569  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 6231160 - 6231106
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  6231160 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtat 6231106  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 39467586 - 39467535
Alignment:
Q  60 tagaggaaatcctactgtaacgttctcattctctcccttatatcatatatca 111  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||    
T  39467586 tagacgaaatcctactgtaacattctcattctctccctcatatcatatatca 39467535  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 6231242 - 6231194
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgac 298  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  6231242 ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgac 6231194  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 39466581 - 39466545
Alignment:
Q  210 aattgttaaactcttcaaaagagtttgaaatatgctt 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  39466581 aattgttaaactcttcaaaagagtttgaaatatgctt 39466545  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 25644199 - 25644249
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  25644199 cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 25644249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 39467527 - 39467490
Alignment:
Q  168 aatcttatttctggtgaaatctttcaaaatgtaggtgg 205  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  39467527 aatcctatttctggtgaaatcttccaaaatgtaggtgg 39467490  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 26419854 - 26419982
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg----tctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatg 345  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    | |||             | ||||||||||||||||||| ||||    
T  26419854 ggctcaggctacggtacatgacctcaatgggtctcctaccataggtgacttgattttttttttattttttttttataaaattgatgtcaaccattagatg 26419953  T
Q  346 tgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||  ||||||||||||||    
T  26419954 tgcttgaaaacttttgaagaccatagtat 26419982  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 14800599 - 14800547
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  14800599 aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtat 14800547  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 14800675 - 14800623
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgt 302  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  14800675 ggcttaggctacggtacatgatctcaatgggtctcctaccgtaggtgacttgt 14800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 16264844 - 16264789
Alignment:
Q  251 gctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt 306  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  16264844 gctcaggctatggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt 16264789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 49304790 - 49304736
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  49304790 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagactatagtat 49304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 16264770 - 16264716
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtat 374  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||    
T  16264770 acaaaattgatgttaaccattggatgtgcttgaaaacttttgaagatcatagtat 16264716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 49304865 - 49304814
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||| |||||||    
T  49304865 ggctcaagctacagtacatgacctcaatgggtctcctaccgtagatgacttg 49304814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 24982195 - 24982245
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  24982195 cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 24982245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 3898991 - 3898942
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  3898991 ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 3898942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 26441482 - 26441531
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| ||||||||||||  ||| |||||||||||| ||||||||||||||    
T  26441482 ggcttaggctacggtacgagacctcaatgggtctcttaccgtaggtgact 26441531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 46210517 - 46210550
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  46210517 caaaattgatgtcaaccattggatgtacttgaaa 46210550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 47139624 - 47139591
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  47139624 caaaattgatgtcaaccattggatgtacttgaaa 47139591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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