View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_low_7 (Length: 386)

Name: NF0304_low_7
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_low_7
NF0304_low_7
[»] chr7 (10 HSPs)
chr7 (61-378)||(37996785-37997100)
chr7 (250-377)||(2947548-2947672)
chr7 (250-378)||(6484586-6484716)
chr7 (320-378)||(1483977-1484035)
chr7 (250-378)||(33142947-33143071)
chr7 (322-378)||(47490772-47490828)
chr7 (321-378)||(12653789-12653846)
chr7 (321-378)||(37625707-37625764)
chr7 (320-378)||(35241349-35241407)
chr7 (32-61)||(37996739-37996768)
[»] scaffold0015 (1 HSPs)
scaffold0015 (250-378)||(34923-35050)
[»] chr8 (9 HSPs)
chr8 (250-378)||(2707632-2707758)
chr8 (320-378)||(37784964-37785022)
chr8 (322-378)||(35971172-35971228)
chr8 (322-378)||(7217732-7217788)
chr8 (250-301)||(35971098-35971149)
chr8 (250-299)||(31128172-31128221)
chr8 (321-378)||(45274966-45275023)
chr8 (250-301)||(37784896-37784947)
chr8 (250-299)||(40225432-40225481)
[»] chr3 (2 HSPs)
chr3 (250-378)||(50036383-50036509)
chr3 (320-378)||(30593771-30593829)
[»] chr2 (5 HSPs)
chr2 (250-378)||(23989351-23989479)
chr2 (322-378)||(29101054-29101110)
chr2 (210-246)||(12198060-12198096)
chr2 (245-299)||(16492966-16493020)
chr2 (250-299)||(5852908-5852957)
[»] chr4 (7 HSPs)
chr4 (250-378)||(56396565-56396691)
chr4 (320-378)||(6231102-6231160)
chr4 (60-111)||(39467535-39467586)
chr4 (250-298)||(6231194-6231242)
chr4 (210-246)||(39466545-39466581)
chr4 (249-299)||(25644199-25644249)
chr4 (168-205)||(39467490-39467527)
[»] chr5 (5 HSPs)
chr5 (249-306)||(41197169-41197226)
chr5 (320-378)||(41197089-41197147)
chr5 (322-378)||(35470840-35470895)
chr5 (250-301)||(35470769-35470820)
chr5 (250-299)||(43067070-43067119)
[»] chr6 (3 HSPs)
chr6 (250-378)||(26419854-26419986)
chr6 (322-378)||(14800543-14800599)
chr6 (250-302)||(14800623-14800675)
[»] chr1 (8 HSPs)
chr1 (320-378)||(49304732-49304790)
chr1 (251-378)||(16264712-16264844)
chr1 (250-301)||(49304814-49304865)
chr1 (321-378)||(47139567-47139624)
chr1 (249-299)||(24982195-24982245)
chr1 (250-299)||(3898942-3898991)
chr1 (250-299)||(26441482-26441531)
chr1 (321-354)||(46210517-46210550)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 61 - 378
Target Start/End: Original strand, 37996785 - 37997100
Alignment:
Q  61 agaggaaatcctactgtaacgttctcattctctcccttatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt 160  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996785 agaggaaatcctactgtaacgttctcattctctccctcatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt 37996884  T
Q  161 ctggtgaaatcttatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996885 ctggtgaaatcctatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta 37996984  T
Q  261 cggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgcttgaaaacttgc 360  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||             | |||||||||||||||||||||||||||||||||||||      
T  37996985 cggtacatgacctcaatgggtctcctatcgtaggtgacttgtcttt--tttttttttttataaaattgatgtcaaccattggatgtgcttgaaaactttt 37997082  T
Q  361 gaagaccatagtattatc 378  Q
    ||||||||||||||||||    
T  37997083 gaagaccatagtattatc 37997100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 2947672 - 2947548
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||    
T  2947672 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt---ttttttttttacaaaattgatgtcaaccattggatgtgct 2947576  T
Q  350 tgaaaacttgcgaagaccatagtattat 377  Q
    |||||||||  |||||||||||||||||    
T  2947575 tgaaaacttttgaagaccatagtattat 2947548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 6484716 - 6484586
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt--cnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtg 347  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||  |            ||||||||||||||||| ||||||||||    
T  6484716 ggctcaagctacggtacatgacctcaatggatctcctaccgtaggtgacttgactttttctttcttttttttacaaaattgatgtcaactattggatgtg 6484617  T
Q  348 cttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||  ||||||||||||||||||    
T  6484616 cttgaaaacttttgaagaccatagtattatc 6484586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 1483977 - 1484035
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  1483977 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc 1484035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 33143071 - 33142947
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||||             | ||||||||||||||||||| ||||||||    
T  33143071 ggctaaggctacggtacatgacctcgatgggtcttctaccgtaggtgacttgacttt----tttttttttataaaattgatgtcaaccatttgatgtgct 33142976  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  ||||||||||||||||||    
T  33142975 tgaaaacttttgaagaccatagtattatc 33142947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 47490772 - 47490828
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    ||||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||    
T  47490772 aaaattgatgtcaaccattagatgtgcttaaaaacttttgaagaccatagtattatc 47490828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 12653789 - 12653846
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||| |||||||  ||  ||||||||| ||||||||    
T  12653789 caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc 12653846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 37625707 - 37625764
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||| |||||||  ||  ||||||||| ||||||||    
T  37625707 caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc 37625764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 35241407 - 35241349
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||| |||||||||  ||||||||| |||||||||||  |||||| |||||||||||    
T  35241407 acaaaactgatgtcaatgattggatgtacttgaaaacttttgaagactatagtattatc 35241349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 37996739 - 37996768
Alignment:
Q  32 aggaagacacggtgcatgcaattgttttta 61  Q
    ||||||||||||||||||||||||||||||    
T  37996739 aggaagacacggtgcatgcaattgttttta 37996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 34923 - 35050
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||             ||||||||||||||||||||||||||||||    
T  34923 ggctcaggctaccgtacatgacttcaatgggtctcctaccgtaagtgacttgacttt-ttttttttttttacaaaattgatgtcaaccattggatgtgct 35021  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  ||||||||||||||||||    
T  35022 tgaaaacttttgaagaccatagtattatc 35050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 2707758 - 2707632
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||             ||||||||||||||||||||||||||||||    
T  2707758 ggctcaagctacggtacatgacctcaatgggtctcctaccgtaggtgacttgatttt--ttattttttttacaaaattgatgtcaaccattggatgtgct 2707661  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  ||||||||||||||||||    
T  2707660 tgaaaacttttgaagaccatagtattatc 2707632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 37784964 - 37785022
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  37784964 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc 37785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 35971172 - 35971228
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  35971172 aaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc 35971228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 7217788 - 7217732
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    ||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  7217788 aaaattgttgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc 7217732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35971098 - 35971149
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||| |||||||||||| |||| ||| |||||||    
T  35971098 ggctcaggctacggtacatgacctcaatgggtctcataccatagatgacttg 35971149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 31128221 - 31128172
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||    
T  31128221 ggcttaggctacggtaggagacatcaatgggtctcctaccgtaggtgact 31128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 45275023 - 45274966
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||| |||||||  ||  ||||||||| ||||||||    
T  45275023 caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc 45274966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 37784896 - 37784947
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||  | |||| |||||||||| |||||||||||    
T  37784896 ggctcaggctacggtacatgatcttaatgagtctcctaccataggtgacttg 37784947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 40225432 - 40225481
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  40225432 ggctctggctacggtaggcgacctcaatgggtctcctaccgtaggtgact 40225481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 50036509 - 50036383
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||             ||||||||||||||||| ||||||||||||    
T  50036509 ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt--tttttttttttacaaaattgatgtcaactattggatgtgct 50036412  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  |||||||||| |||||||    
T  50036411 tgaaaactttagaagaccataatattatc 50036383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 30593771 - 30593829
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    ||||||||||||||||||||||||||| ||||||| |||  |||||| ||| |||||||    
T  30593771 acaaaattgatgtcaaccattggatgtacttgaaagcttttgaagactataatattatc 30593829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 23989479 - 23989351
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||    
T  23989479 ggctcaggctacggtaaatggcctcaatgggtctcctaccgtaggtgacttgacttttttttttttttttacaaaattgatgtcaaccattggatgtgct 23989380  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  ||||| ||||||||||||    
T  23989379 tgaaaacttttgaagatcatagtattatc 23989351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 29101110 - 29101054
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  29101110 aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc 29101054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 12198060 - 12198096
Alignment:
Q  210 aattgttaaactcttcaaaagagtttgaaatatgctt 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  12198060 aattgttaaactcttcaaaagagtttgaaatatgctt 12198096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 16492966 - 16493020
Alignment:
Q  245 tttgcggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  16492966 tttgtggctctggctacggtatgcgacctcaatgggtctcctaccgtaggtgact 16493020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 5852908 - 5852957
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| ||||||||||   ||| |||||||||||||||||||||||||||    
T  5852908 ggctccggctacggtaggcgacttcaatgggtctcctaccgtaggtgact 5852957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 56396691 - 56396565
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct 349  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||||||||  |||             |||||| |||||||||||||||||||||||    
T  56396691 ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgacttgatttt--tttttttttttacaaaactgatgtcaaccattggatgtgct 56396594  T
Q  350 tgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||  ||||||||||||||||||    
T  56396593 tgaaaacttttgaagaccatagtattatc 56396565  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 6231160 - 6231102
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6231160 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc 6231102  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 39467586 - 39467535
Alignment:
Q  60 tagaggaaatcctactgtaacgttctcattctctcccttatatcatatatca 111  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||    
T  39467586 tagacgaaatcctactgtaacattctcattctctccctcatatcatatatca 39467535  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 6231242 - 6231194
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgac 298  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  6231242 ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgac 6231194  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 39466581 - 39466545
Alignment:
Q  210 aattgttaaactcttcaaaagagtttgaaatatgctt 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  39466581 aattgttaaactcttcaaaagagtttgaaatatgctt 39466545  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 25644199 - 25644249
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  25644199 cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 25644249  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 39467527 - 39467490
Alignment:
Q  168 aatcttatttctggtgaaatctttcaaaatgtaggtgg 205  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  39467527 aatcctatttctggtgaaatcttccaaaatgtaggtgg 39467490  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 41197226 - 41197169
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  41197226 cggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt 41197169  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 41197147 - 41197089
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  41197147 acaaaattgatgtcaaccattggatgtgtttgaaaacttttgaagaccatagtattatc 41197089  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 35470840 - 35470895
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  35470840 aaaattgatgtcaaccattgg-tgtgcttgaaaacttttgaagaccatagtattatc 35470895  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35470769 - 35470820
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||||||||||||||||||  ||||| ||||||||| | |||||||||||    
T  35470769 ggctcaggctacggtacatgatctcaataggtctcctaacataggtgacttg 35470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 43067070 - 43067119
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  43067070 ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 43067119  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 26419854 - 26419986
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg----tctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatg 345  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    | |||             | ||||||||||||||||||| ||||    
T  26419854 ggctcaggctacggtacatgacctcaatgggtctcctaccataggtgacttgattttttttttattttttttttataaaattgatgtcaaccattagatg 26419953  T
Q  346 tgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||  ||||||||||||||||||    
T  26419954 tgcttgaaaacttttgaagaccatagtattatc 26419986  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 14800599 - 14800543
Alignment:
Q  322 aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  14800599 aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc 14800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 14800675 - 14800623
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgt 302  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  14800675 ggcttaggctacggtacatgatctcaatgggtctcctaccgtaggtgacttgt 14800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 49304790 - 49304732
Alignment:
Q  320 acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  49304790 acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagactatagtattatc 49304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 16264844 - 16264712
Alignment:
Q  251 gctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg-----tctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatg 345  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||     | |||             ||||||||||||| ||||||||||||    
T  16264844 gctcaggctatggtacatgacctcaatgggtctcctaccgtaggtgacttgactttttttttttttttttttttacaaaattgatgttaaccattggatg 16264745  T
Q  346 tgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||  ||||| ||||||||||||    
T  16264744 tgcttgaaaacttttgaagatcatagtattatc 16264712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 49304865 - 49304814
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg 301  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||| |||||||    
T  49304865 ggctcaagctacagtacatgacctcaatgggtctcctaccgtagatgacttg 49304814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 47139624 - 47139567
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc 378  Q
    |||||||||||||||||||||||||| |||||||  ||  ||||||||| ||||||||    
T  47139624 caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc 47139567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 24982195 - 24982245
Alignment:
Q  249 cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    ||||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  24982195 cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 24982245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 3898991 - 3898942
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| |||||||||||   ||| |||||||||||||||||||||||||||    
T  3898991 ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact 3898942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 26441482 - 26441531
Alignment:
Q  250 ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact 299  Q
    |||| ||||||||||||  ||| |||||||||||| ||||||||||||||    
T  26441482 ggcttaggctacggtacgagacctcaatgggtctcttaccgtaggtgact 26441531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 46210517 - 46210550
Alignment:
Q  321 caaaattgatgtcaaccattggatgtgcttgaaa 354  Q
    |||||||||||||||||||||||||| |||||||    
T  46210517 caaaattgatgtcaaccattggatgtacttgaaa 46210550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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