View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0311-INSERTION-4 (Length: 646)

Name: NF0311-INSERTION-4
Description: NF0311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0311-INSERTION-4
NF0311-INSERTION-4
[»] chr8 (22 HSPs)
chr8 (36-646)||(13519837-13520442)
chr8 (36-646)||(13609372-13609977)
chr8 (261-372)||(12762856-12762967)
chr8 (256-371)||(31746387-31746502)
chr8 (256-359)||(43980577-43980680)
chr8 (278-371)||(40602023-40602116)
chr8 (238-314)||(34514650-34514726)
chr8 (256-359)||(26878722-26878825)
chr8 (256-359)||(38770181-38770284)
chr8 (306-393)||(45283446-45283532)
chr8 (278-371)||(36437532-36437625)
chr8 (256-371)||(14577634-14577749)
chr8 (256-359)||(24962359-24962462)
chr8 (256-359)||(25198298-25198401)
chr8 (256-359)||(43191471-43191574)
chr8 (254-359)||(10396224-10396327)
chr8 (305-371)||(23399759-23399825)
chr8 (278-359)||(12998687-12998768)
chr8 (278-371)||(36309578-36309671)
chr8 (254-359)||(38761352-38761457)
chr8 (278-371)||(45203789-45203882)
chr8 (256-356)||(34882679-34882779)
[»] chr7 (10 HSPs)
chr7 (251-371)||(10408549-10408669)
chr7 (256-359)||(4089493-4089596)
chr7 (256-371)||(21809628-21809743)
chr7 (256-359)||(40740959-40741064)
chr7 (278-359)||(31373691-31373772)
chr7 (256-364)||(37491607-37491715)
chr7 (256-359)||(21801049-21801152)
chr7 (256-359)||(48193624-48193727)
chr7 (273-371)||(1324734-1324832)
chr7 (256-372)||(25750377-25750493)
[»] chr4 (19 HSPs)
chr4 (256-359)||(20291349-20291452)
chr4 (256-359)||(37625118-37625221)
chr4 (256-371)||(38136364-38136479)
chr4 (256-393)||(31486497-31486634)
chr4 (256-359)||(28116498-28116601)
chr4 (256-359)||(10602203-10602302)
chr4 (273-371)||(16070457-16070555)
chr4 (254-355)||(31294163-31294264)
chr4 (256-356)||(14602651-14602751)
chr4 (256-359)||(20262387-20262490)
chr4 (256-359)||(24072776-24072879)
chr4 (256-359)||(25477234-25477337)
chr4 (256-371)||(33246478-33246593)
chr4 (256-365)||(46729314-46729423)
chr4 (256-328)||(3094191-3094263)
chr4 (256-356)||(29584903-29585003)
chr4 (256-359)||(39414245-39414346)
chr4 (291-359)||(43800852-43800920)
chr4 (256-368)||(56373328-56373440)
[»] chr6 (8 HSPs)
chr6 (238-356)||(9941013-9941131)
chr6 (256-371)||(1763822-1763937)
chr6 (256-359)||(19838940-19839043)
chr6 (256-370)||(12514568-12514682)
chr6 (256-368)||(15981803-15981915)
chr6 (256-368)||(16327132-16327244)
chr6 (292-371)||(31039191-31039270)
chr6 (256-371)||(31945894-31946009)
[»] chr5 (15 HSPs)
chr5 (238-367)||(16969194-16969329)
chr5 (258-371)||(30348057-30348170)
chr5 (256-359)||(27642511-27642614)
chr5 (256-359)||(36177301-36177404)
chr5 (256-359)||(39690478-39690581)
chr5 (310-371)||(5845239-5845300)
chr5 (338-371)||(30317840-30317873)
chr5 (256-371)||(20946096-20946211)
chr5 (278-356)||(4857489-4857567)
chr5 (338-372)||(10934097-10934131)
chr5 (278-371)||(16095-16188)
chr5 (278-359)||(3559019-3559100)
chr5 (310-359)||(8717951-8718000)
chr5 (254-359)||(21912127-21912232)
chr5 (256-356)||(4745136-4745236)
[»] chr3 (17 HSPs)
chr3 (276-371)||(32848611-32848706)
chr3 (278-371)||(35055816-35055909)
chr3 (255-371)||(383613-383729)
chr3 (254-355)||(38668523-38668624)
chr3 (240-372)||(47916189-47916320)
chr3 (256-359)||(12077738-12077841)
chr3 (256-371)||(14645872-14645987)
chr3 (256-359)||(44083635-44083738)
chr3 (256-371)||(20945283-20945398)
chr3 (256-359)||(22659588-22659691)
chr3 (256-371)||(33287874-33287989)
chr3 (273-359)||(26243497-26243583)
chr3 (207-329)||(27697128-27697249)
chr3 (305-371)||(50363084-50363150)
chr3 (278-359)||(21932956-21933037)
chr3 (338-371)||(33411958-33411991)
chr3 (254-359)||(48903078-48903183)
[»] chr2 (15 HSPs)
chr2 (256-359)||(11071677-11071780)
chr2 (238-354)||(1604312-1604428)
chr2 (256-359)||(17250954-17251057)
chr2 (256-371)||(21012862-21012977)
chr2 (256-359)||(37355045-37355148)
chr2 (256-367)||(40346066-40346177)
chr2 (256-371)||(3645332-3645447)
chr2 (256-371)||(24774874-24774989)
chr2 (256-371)||(35178774-35178889)
chr2 (256-359)||(44424604-44424707)
chr2 (270-359)||(3237746-3237835)
chr2 (256-329)||(4398547-4398620)
chr2 (278-359)||(26512102-26512183)
chr2 (256-368)||(28264935-28265047)
chr2 (256-356)||(45150732-45150832)
[»] chr1 (26 HSPs)
chr1 (256-371)||(2342912-2343027)
chr1 (256-371)||(4081934-4082049)
chr1 (256-359)||(4813454-4813557)
chr1 (256-359)||(8984653-8984756)
chr1 (256-359)||(15512773-15512876)
chr1 (253-352)||(22786731-22786830)
chr1 (256-359)||(23982584-23982687)
chr1 (256-359)||(28948956-28949059)
chr1 (238-370)||(17426706-17426834)
chr1 (256-354)||(28723650-28723748)
chr1 (273-371)||(47070941-47071039)
chr1 (256-372)||(15911531-15911647)
chr1 (256-359)||(5085081-5085184)
chr1 (256-359)||(13723470-13723573)
chr1 (256-371)||(20564783-20564898)
chr1 (238-325)||(34031384-34031471)
chr1 (256-359)||(38680483-38680586)
chr1 (278-371)||(51390517-51390607)
chr1 (278-359)||(8877802-8877883)
chr1 (256-368)||(23393498-23393607)
chr1 (254-359)||(31305324-31305429)
chr1 (256-359)||(32047450-32047552)
chr1 (278-359)||(47754634-47754715)
chr1 (291-359)||(24415043-24415111)
chr1 (256-356)||(32152166-32152266)
chr1 (335-371)||(34028481-34028517)
[»] scaffold0116 (1 HSPs)
scaffold0116 (261-314)||(2889-2942)
[»] scaffold0005 (1 HSPs)
scaffold0005 (256-356)||(214627-214727)
[»] scaffold1091 (1 HSPs)
scaffold1091 (256-355)||(1910-2009)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 36 - 646
Target Start/End: Complemental strand, 13520442 - 13519837
Alignment:
Q  36 agtttgcgagtatataagtatttcaatgggagatgagtgttctcgacttcctaatacttttttaa-cattcattattttatttaatgacatttatgcgat 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||    
T  13520442 agtttgcgagtatataagtatttcaatgggagatgagtgttctcgatttcctaatactttttttagcatttattattttatttaatgacatctatgcgat 13520343  T
Q  135 tctcacattttagtaatagatatcatgtaaagtgatgaaacatgcatgtatttcatcaaatnnnnnnntaagtacttcttttgtcccttaatataagcac 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||| |||    
T  13520342 tctcacattttagtaatagatatcatgtaaagtgatgaaacatgcatgtatttcatcaaatgaaaaaataagtacttcttttgtcccttattataaacac 13520243  T
Q  235 ctatgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtc 334  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13520242 ctatgactaatttcagccatattaagaaaagttggtaatgaagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtc 13520143  T
Q  335 tttaatttgacttttcatatttcaatgcaagttagtaacgttaaatagagacatgtttaagnnnnnnnnnnnnnnnnnnnnngcacctgataatttgtaa 434  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||                     ||| ||||||||||||||    
T  13520142 tttaatttgacttttcatatttcaatgcaagttagtaacattaaatagagatatgcttaag----aaaataaataaataaatgcatctgataatttgtaa 13520047  T
Q  435 gagaacttatatttatagactagagattcttttaaatagggcttataattaggaattgagggagtattaaagtgnnnnnnnnnnnngagagaattaaaga 534  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||  ||| ||||||||||| |             |||||||||||||    
T  13520046 gagaacttatatttatagactagacattcttgtaaatcgggcttataattaggaaccgagagagtattaaagagtgttttttttta-agagaattaaaga 13519948  T
Q  535 gtgttttagagagggtgtccaagcatttctctttggaaaatgctaacatgtgtcctaaagatacttgtnaaggatagtaaaattggaaattgtctattaa 634  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||||||| |||||||| |||||| |||||||   ||| || |||||||||||| |    
T  13519947 gtgttttagaga-ggtgtccaaacatttctctttaaaaaatgctaacatgtgccctaaagacacttgttaaggataccgaaagtgaaaattgtctattga 13519849  T
Q  635 aaatagtccaaa 646  Q
    ||||||||||||    
T  13519848 aaatagtccaaa 13519837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 36 - 646
Target Start/End: Complemental strand, 13609977 - 13609372
Alignment:
Q  36 agtttgcgagtatataagtatttcaatgggagatgagtgttctcgacttcctaatacttttttaa-cattcattattttatttaatgacatttatgcgat 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||    
T  13609977 agtttgcgagtatataagtatttcaatgggagatgagtgttctcgatttcctaatactttttttagcatttattattttatttaatgacatctatgcgat 13609878  T
Q  135 tctcacattttagtaatagatatcatgtaaagtgatgaaacatgcatgtatttcatcaaatnnnnnnntaagtacttcttttgtcccttaatataagcac 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||| |||    
T  13609877 tctcacattttagtaatagatatcatgtaaagtgatgaaacatgcatgtatttcatcaaatgaaaaaataagtacttcttttgtcccttattataaacac 13609778  T
Q  235 ctatgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtc 334  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609777 ctatgactaatttcagccatattaagaaaagttggtaatgaagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtc 13609678  T
Q  335 tttaatttgacttttcatatttcaatgcaagttagtaacgttaaatagagacatgtttaagnnnnnnnnnnnnnnnnnnnnngcacctgataatttgtaa 434  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||                     ||| ||||||||||||||    
T  13609677 tttaatttgacttttcatatttcaatgcaagttagtaacattaaatagagatatgcttaag----aaaataaataaataaatgcatctgataatttgtaa 13609582  T
Q  435 gagaacttatatttatagactagagattcttttaaatagggcttataattaggaattgagggagtattaaagtgnnnnnnnnnnnngagagaattaaaga 534  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||  ||| ||||||||||| |             |||||||||||||    
T  13609581 gagaacttatatttatagactagacattcttgtaaatcgggcttataattaggaaccgagagagtattaaagagtgttttttttta-agagaattaaaga 13609483  T
Q  535 gtgttttagagagggtgtccaagcatttctctttggaaaatgctaacatgtgtcctaaagatacttgtnaaggatagtaaaattggaaattgtctattaa 634  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||||||| |||||||| |||||| |||||||   ||| || |||||||||||| |    
T  13609482 gtgttttagaga-ggtgtccaaacatttctctttaaaaaatgctaacatgtgccctaaagacacttgttaaggataccgaaagtgaaaattgtctattga 13609384  T
Q  635 aaatagtccaaa 646  Q
    ||||||||||||    
T  13609383 aaatagtccaaa 13609372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 12762856 - 12762967
Alignment:
Q  261 aaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaat 360  Q
    |||||||| ||||| | ||||||||| || ||||||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||||||||||||     
T  12762856 aaaagttgttaatgcaattaatgtgtctattttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaag 12762955  T
Q  361 gcaagttagtaa 372  Q
     |||||||||||    
T  12762956 acaagttagtaa 12762967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 31746502 - 31746387
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || || | ||||||||| || ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  31746502 ttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 31746403  T
Q  356 tcaatgcaagttagta 371  Q
    |||| |||||||||||    
T  31746402 tcaaagcaagttagta 31746387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 43980680 - 43980577
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| ||||||| ||||||  || || ||||||||||||  ||||    
T  43980680 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattatcatttgtttgtatgtgtattaaatttgactttttgtatt 43980581  T
Q  356 tcaa 359  Q
    ||||    
T  43980580 tcaa 43980577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 40602116 - 40602023
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| | |||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||| ||||||||||||||||||||||||||    
T  40602116 ttaatgtgtcttatttatgtgttaatattactaaattatcctttgtttgtatgtgtattaaatttgatttttcatatttcaatgcaagttagta 40602023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 34514726 - 34514650
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaatt 314  Q
    |||||||||| |  |||||||| ||| |||| ||||||||||||| |||||| |||||||||||| |||| ||||||    
T  34514726 tgactaattttacacatattaaaaaatgttgataatgtagttaatatgtttagtttgtgtgtgaattttattaaatt 34514650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 26878825 - 26878722
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| ||||||| ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||   | || ||||||||||| ||||||    
T  26878825 ttaagaaaagttgttaatgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgtttgtatgtatattaaatttgactttacatatt 26878726  T
Q  356 tcaa 359  Q
    ||||    
T  26878725 tcaa 26878722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 38770284 - 38770181
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||| ||||||  | |||| |||||||||||| ||||||||| ||  |||| ||||| ||||||| ||||||  || || | ||||||||||||||||    
T  38770284 ttaagataagttgtcagtgtaattaatgtgtttattttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaattttgacttttcatatt 38770185  T
Q  356 tcaa 359  Q
    ||||    
T  38770184 tcaa 38770181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 45283532 - 45283446
Alignment:
Q  306 tactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagtaacgttaaatagagacatgttta 393  Q
    ||||||||| ||||||| ||||||  || || ||||||||| |||||||||||| ||||||||||||| |||| ||| || |||||||    
T  45283532 tactaaattatcatttgtttgtatgggtattaaatttgactattcatatttcaa-gcaagttagtaacattaattagggatatgttta 45283446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 36437532 - 36437625
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||||||  ||||||||||    
T  36437532 ttaatgtgtctattttgtgtgttaacattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagta 36437625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 14577749 - 14577634
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||||| ||| ||  |||| ||||| |  |||| ||||||  || || ||||||| ||||||||||    
T  14577749 ttaagaaaagttgttagtgtaattaatgtgtctattttgtttgttaatattaccaaattgtactttgtttgtatgtgtattaaatttgatttttcatatt 14577650  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  14577649 tcaagacaagttagta 14577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 24962462 - 24962359
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||| ||||||  ||||    
T  24962462 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttaactttttgtatt 24962363  T
Q  356 tcaa 359  Q
    ||||    
T  24962362 tcaa 24962359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 25198298 - 25198401
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| |||||||||||  ||||||||| ||  |||| ||||| || |||| ||||||  || |  ||||||||||||||||||    
T  25198298 ttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtataaaatttgacttttcatatt 25198397  T
Q  356 tcaa 359  Q
    ||||    
T  25198398 tcaa 25198401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 43191574 - 43191471
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||  || |||| |||||||||||| || ||| ||||| ||  |||||||||| ||||||| ||||||  || || ||||| | ||||||||||    
T  43191574 ttaagaaaaaatgttaatttagttaatgtgtctattttatgtgttaatattactaaattgtcatttgtttgtatgtgtattaaatttaaattttcatatt 43191475  T
Q  356 tcaa 359  Q
    ||||    
T  43191474 tcaa 43191471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 10396327 - 10396224
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    |||||||||||||||  |||||| ||||||| | |  ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||| ||    
T  10396327 tattaagaaaagttgtcaatgtaattaatgtttgt--tttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgacttttcgta 10396230  T
Q  354 tttcaa 359  Q
    ||||||    
T  10396229 tttcaa 10396224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 23399825 - 23399759
Alignment:
Q  305 ttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||||||||| || |||| ||||||  || || ||||||||||||||||||||||  ||||||||||    
T  23399825 ttactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaaccaagttagta 23399759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 12998768 - 12998687
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||  || ||||||||||||  |||||||||| || |||| ||||||  || || |||||||| |||||||||||||    
T  12998768 ttaatgtgcatattttgtgtgtgaatattactaaattgtcctttgtttgtatgtgtattaaatttgacctttcatatttcaa 12998687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 36309671 - 36309578
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| || ||||||||| ||  |||  ||||| ||||||| ||||||  || || ||||||||||||||||||| ||  ||||||||||    
T  36309671 ttaatgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttagta 36309578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 38761457 - 38761352
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    |||||| ||||||||  | |||| ||||||||| |  ||||||||| ||  |||  ||||| ||||||| ||||||  || || ||||||||||||||||    
T  38761457 tattaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatgaaattgtcatttgtttgtatgtgtattaaatttgacttttcata 38761358  T
Q  354 tttcaa 359  Q
    ||||||    
T  38761357 tttcaa 38761352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 45203789 - 45203882
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| || ||||| ||| ||  |||| || || || |||| |||||| ||| || ||||||||||||||||||||||  ||||||||||    
T  45203789 ttaatgtgtctattttgtatgttaatattaccaacttgtcctttgtttgtatgcgtattaaatttgacttttcatatttcaagacaagttagta 45203882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 34882679 - 34882779
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| ||||| | ||||||||| || ||||||||| ||  |||  ||||| || |||| ||||||  || || ||||||||||||||||||    
T  34882679 ttaagaaaaattgttaatgcaattaatgtgtctattttgtgtgttaatattatcaaattatcttttgtttgtatgtgtgttaaatttgacttttcatatt 34882778  T
Q  356 t 356  Q
    |    
T  34882779 t 34882779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 251 - 371
Target Start/End: Complemental strand, 10408669 - 10408549
Alignment:
Q  251 ccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttc 350  Q
    ||||| ||||||||  ||||| ||||| |||||||| || |||||||||||| |||||||| || || |||| ||||||  || || ||||||| |||||    
T  10408669 ccatagtaagaaaacgtggtagtgtagataatgtgtctagtttgtgtgtgaattttactaatttgtcctttgtttgtatgtgtattaaatttgatttttc 10408570  T
Q  351 atatttcaatgcaagttagta 371  Q
    |||||||||||||||||||||    
T  10408569 atatttcaatgcaagttagta 10408549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 4089596 - 4089493
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| || |||| ||||||| || || ||||||||||||||||||    
T  4089596 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattatcttttgtttgtatatgtattaaatttgacttttcatatt 4089497  T
Q  356 tcaa 359  Q
    ||||    
T  4089496 tcaa 4089493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 21809743 - 21809628
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||   ||||| ||||||||| |  ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||||||||    
T  21809743 ttaagaaaagttgtcgatgtaattaatgtgtctgttttttgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatt 21809644  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  21809643 tcaaaacaagttagta 21809628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 40740959 - 40741064
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtata--cgtctttaatttgacttttcata 353  Q
    ||||||||||||| ||||||| ||||| ||| || ||||||||| ||  |||| ||||| ||||||  |||||||   || || ||||||||||||||||    
T  40740959 ttaagaaaagttgttaatgtaattaatatgtctattttgtgtgttaatattaccaaattatcatttctttgtatatgtgtgttaaatttgacttttcata 40741058  T
Q  354 tttcaa 359  Q
    ||||||    
T  40741059 tttcaa 40741064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 31373772 - 31373691
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| || ||||||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||||||||||||    
T  31373772 ttaatgtgtctattttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaa 31373691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 364
Target Start/End: Complemental strand, 37491715 - 37491607
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || || | ||||||||| || ||| | ||| ||  |||| ||||| || |||| ||||||| || || ||||||||||||||||||    
T  37491715 ttaagaaaagttgttagtgcaattaatgtgtctattttatatgttaatattaccaaattatcctttgtttgtatatgtattaaatttgacttttcatatt 37491616  T
Q  356 tcaatgcaa 364  Q
    |||| ||||    
T  37491615 tcaaggcaa 37491607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 21801152 - 21801049
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||   ||||| ||||||||| |  ||||||||| ||  |||||||||| ||||||  ||||||  || || |||||||||||| |||||    
T  21801152 ttaagaaaagttgtcgatgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcatttatttgtatgtgtattaaatttgactttttatatt 21801053  T
Q  356 tcaa 359  Q
    ||||    
T  21801052 tcaa 21801049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 48193624 - 48193727
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || |||| ||||||||| || ||||||||| ||  |||| ||||| || |||| || |||  || || ||||||||||||||||||    
T  48193624 ttaagaaaaattgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgtttatattagtattaaatttgacttttcatatt 48193723  T
Q  356 tcaa 359  Q
    ||||    
T  48193724 tcaa 48193727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 371
Target Start/End: Original strand, 1324734 - 1324832
Alignment:
Q  273 tgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||| ||||||||| |  ||||||||| ||  |||  ||||| ||||||| ||||||  || || ||||||||||||||||||||||  ||||||||||    
T  1324734 tgtaattaatgtgtctgttttgtgtgttaatcttatcaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagta 1324832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 372
Target Start/End: Original strand, 25750377 - 25750493
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||| ||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||| ||||||||||    
T  25750377 ttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgatttttcatatt 25750476  T
Q  356 tcaatgcaagttagtaa 372  Q
    ||||  |||| ||||||    
T  25750477 tcaagacaaggtagtaa 25750493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 20291349 - 20291452
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||||||||||| ||||||||| || |||||| || ||  |||||||||| ||||||| ||||||  || || ||||||||||||||||||    
T  20291349 ttaagaaaagttggtaatgtaattaatgtgtctattttgtgggttaatattactaaattatcatttgtttgtatgtgtattaaatttgacttttcatatt 20291448  T
Q  356 tcaa 359  Q
    ||||    
T  20291449 tcaa 20291452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 37625221 - 37625118
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | | || |||||||||||| ||||||||| ||  |||||||||| ||||||| || |||  || || ||||||||||||||||||    
T  37625221 ttaagaaaagttgtcagtataattaatgtgtttattttgtgtgttaatattactaaattatcatttgtttatatgtgtattaaatttgacttttcatatt 37625122  T
Q  356 tcaa 359  Q
    ||||    
T  37625121 tcaa 37625118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 38136364 - 38136479
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || |||| ||||||||| || ||||||||| ||  |||  ||||| ||||||| ||||||  ||  ||||||||| ||||||||||    
T  38136364 ttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtaattaatttgatttttcatatt 38136463  T
Q  356 tcaatgcaagttagta 371  Q
    |||| |||||||||||    
T  38136464 tcaaggcaagttagta 38136479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 393
Target Start/End: Original strand, 31486497 - 31486634
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || || | ||||||||| || ||||||||| ||  |||||||||| || |||| || ||| ||| || ||||||| |||| |||||    
T  31486497 ttaagaaaagttgttagtgcaattaatgtgtctattttgtgtgttaatattactaaattatcctttgtttatatgcgtattaaatttgattttttatatt 31486596  T
Q  356 tcaatgcaagttagtaacgttaaatagagacatgttta 393  Q
    |||| ||||||| ||||  |||| || ||| |||||||    
T  31486597 tcaaggcaagttggtaatattaattaaagatatgttta 31486634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 28116601 - 28116498
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||| ||| || ||||||||| ||  || | ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  28116601 ttaagaaaagttgttagtgtaattaatatgtctattttgtgtgttaatattgccaaattatcatttgtttgtatgtgtattaaatttgacttttcatatt 28116502  T
Q  356 tcaa 359  Q
    ||||    
T  28116501 tcaa 28116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 10602302 - 10602203
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||||| |||| ||||| ||| || ||||||||| ||  |||||||||| || |||| ||||    || || ||||||||||||||||||    
T  10602302 ttaagaaaagttggtagtgtaattaatttgtctattttgtgtgttaatattactaaattgtcttttgtttgt----gtattaaatttgacttttcatatt 10602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 371
Target Start/End: Original strand, 16070457 - 16070555
Alignment:
Q  273 tgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||| ||||||||| |  ||||||||| ||  |||| ||||| || |||| || |||| || || ||||||||||||||||||||||| ||||||||||    
T  16070457 tgtaattaatgtgtctgttttgtgtgttaatattaccaaattatcttttgtttatatatgtattaaatttgacttttcatatttcaatacaagttagta 16070555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 31294163 - 31294264
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    ||||||||||||||| || ||| ||| |||||| || ||||||||| || ||||||| ||| | ||||| ||||||  |  ||| |||||||||||||||    
T  31294163 tattaagaaaagttgatagtgttgttcatgtgtctagtttgtgtgtaaattttactacattgttatttgtttgtatgtgaatttgatttgacttttcata 31294262  T
Q  354 tt 355  Q
    ||    
T  31294263 tt 31294264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 356
Target Start/End: Complemental strand, 14602751 - 14602651
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||| ||||| ||  |||| ||||| ||||||| ||||||  || || |||||||||||| |||||    
T  14602751 ttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatatt 14602652  T
Q  356 t 356  Q
    |    
T  14602651 t 14602651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 20262490 - 20262387
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| | ||||| ||||||  || || ||||||||||||||||||    
T  20262490 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgttatttgtttgtatgtgtattaaatttgacttttcatatt 20262391  T
Q  356 tcaa 359  Q
    ||||    
T  20262390 tcaa 20262387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 24072776 - 24072879
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  |||||| ||||||||| |  ||| ||||| ||  |||  ||||| ||||||||||| ||  || || ||||||||||||||||||    
T  24072776 ttaagaaaagttgtcaatgtaattaatgtgtctgttttttgtgttaatattatgaaattgtcatttgcttgaatgtgtattaaatttgacttttcatatt 24072875  T
Q  356 tcaa 359  Q
    ||||    
T  24072876 tcaa 24072879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 25477234 - 25477337
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||| ||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  25477234 ttaagaaaagttgtcagtgtaattaatgtgtctgttttatgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 25477333  T
Q  356 tcaa 359  Q
    ||||    
T  25477334 tcaa 25477337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 33246593 - 33246478
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||  ||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||| ||||||    
T  33246593 ttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgtgtattaaatttgactttacatatt 33246494  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  33246493 tcaagacaagttagta 33246478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 46729314 - 46729423
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| || | || ||||||  || || ||||||||||||||||||    
T  46729314 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctatgtttgtatgtgtattaaatttgacttttcatatt 46729413  T
Q  356 tcaatgcaag 365  Q
    |||| |||||    
T  46729414 tcaaggcaag 46729423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 3094191 - 3094263
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgta 328  Q
    ||||||||||||| ||| ||| ||||||||| || ||||||||| ||  |||| ||||| ||||||| |||||    
T  3094191 ttaagaaaagttgttaaagtaattaatgtgtctattttgtgtgttaatattaccaaattgtcatttgtttgta 3094263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 29584903 - 29585003
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || |||| ||||||||| || | ||||||| ||  |||| ||||| ||||||| ||||||  || || |||||||||||| |||||    
T  29584903 ttaagaaaaattgttagtgtaattaatgtgtctattctgtgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatatt 29585002  T
Q  356 t 356  Q
    |    
T  29585003 t 29585003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 39414245 - 39414346
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| ||||| | ||||| ||| || ||||||||| ||  |||  ||||| || |||| ||||||  || || ||||||||||||||||||    
T  39414245 ttaagaaaagttgataatgcaattaatatgtctattttgtgtgttaatattatcaaattatcttttgtttgtat--gtgttaaatttgacttttcatatt 39414342  T
Q  356 tcaa 359  Q
    ||||    
T  39414343 tcaa 39414346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 43800852 - 43800920
Alignment:
Q  291 tttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| ||  |||| ||||| || |||| ||||||  || |||||||||||||||||||||||||    
T  43800852 tttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtatttaatttgacttttcatatttcaa 43800920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 56373440 - 56373328
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || || | |||||||||||| ||||||||| ||  |||| ||||| ||||||| |||| |  || || ||||||  ||||||||||    
T  56373440 ttaagaaaaattgttagtgcaattaatgtgtttattttgtgtgttaatattaccaaattgtcatttgtttgtctgtgtattaaatttgttttttcatatt 56373341  T
Q  356 tcaatgcaagtta 368  Q
    ||||  |||||||    
T  56373340 tcaagacaagtta 56373328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 9941013 - 9941131
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtcttt 337  Q
    ||||||| ||||  ||||||||||||||||| ||||||||||||||| | |||||||||| |||| ||||||||| | |  |||| ||| |   || |||    
T  9941013 tgactaaattcacgcatattaagaaaagttgataatgtagttaatgtatctaatttgtgtttgaattttactaaactgttctttgtttgcaagtgtattt 9941112  T
Q  338 aatttgacttttcatattt 356  Q
    |||||||||||||||||||    
T  9941113 aatttgacttttcatattt 9941131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 1763822 - 1763937
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||||||||| || |||| ||||||  || || |||||||||||||| |||    
T  1763822 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgacttttcaaatt 1763921  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  1763922 tcaagacaagttagta 1763937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 19838940 - 19839043
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||  ||||    
T  19838940 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatt 19839039  T
Q  356 tcaa 359  Q
    ||||    
T  19839040 tcaa 19839043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 370
Target Start/End: Complemental strand, 12514682 - 12514568
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || || | ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  12514682 ttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatt 12514583  T
Q  356 tcaatgcaagttagt 370  Q
    ||||  |||||||||    
T  12514582 tcaagacaagttagt 12514568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 15981803 - 15981915
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| |  |||| ||||||||| |  ||||||||| ||  |||| ||||| ||||| | ||||||  ||||| ||||| ||||||||||||    
T  15981803 ttaagaaaagttgttggtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcattagtttgtatgtgtcttaaatttaacttttcatatt 15981902  T
Q  356 tcaatgcaagtta 368  Q
    ||||  |||||||    
T  15981903 tcaagacaagtta 15981915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 16327132 - 16327244
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  ||| || ||||||||| |  ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||| ||||||||||||    
T  16327132 ttaagaaaagttgtcaatataattaatgtgtctgttttgtgtgttaatattaccaaattgtcatttgtttgtatttgtattaaatttaacttttcatatt 16327231  T
Q  356 tcaatgcaagtta 368  Q
    ||||  |||||||    
T  16327232 tcaagacaagtta 16327244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 31039191 - 31039270
Alignment:
Q  292 ttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||||||| || |||| ||| || ||||||| ||||||  |  |||||||||||||||||||||||||  ||||||||||    
T  31039191 ttgtgtgtaaattttattaatttatcatttgtttgtatgtgcatttaatttgacttttcatatttcaagacaagttagta 31039270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 31946009 - 31945894
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || |||| ||||||||| || ||||||||| ||  |||| ||||| || |||| || |||  || || ||||||||||| ||||||    
T  31946009 ttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcgtttgtttatatgtgtattaaatttgactttacatatt 31945910  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  31945909 tcaagacaagttagta 31945894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 367
Target Start/End: Original strand, 16969194 - 16969329
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaatt------ctcatttgcttgtatac 331  Q
    |||||||||| | ||||||||| ||||||||||| | ||||||||   | ||||||||||||||| |||||||||||       | ||||| |||||||     
T  16969194 tgactaattttacccatattaaaaaaagttggtagtatagttaattcatctaatttgtgtgtgaattttactaaattatagaagtaatttgtttgtatat 16969293  T
Q  332 gtctttaatttgacttttcatatttcaatgcaagtt 367  Q
     | ||||||||||||||| |||||||||||||||||    
T  16969294 atatttaatttgacttttgatatttcaatgcaagtt 16969329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 30348170 - 30348057
Alignment:
Q  258 aagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttc 357  Q
    ||||||||||| |||| || ||||||||| || ||||||||| ||  |||| ||||| || |||| |||| |  || || ||||||||||||||||||||    
T  30348170 aagaaaagttgttaatttacttaatgtgtctattttgtgtgttaatattaccaaattttcctttgtttgtgtgtgtattaaatttgacttttcatatttc 30348071  T
Q  358 aatgcaagttagta 371  Q
    || |||||||||||    
T  30348070 aaggcaagttagta 30348057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 27642511 - 27642614
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||  ||||    
T  27642511 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattatcctttgtttgtatgtgtattaaatttgactttttgtatt 27642610  T
Q  356 tcaa 359  Q
    ||||    
T  27642611 tcaa 27642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 36177301 - 36177404
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||   | |||| ||||||||| || ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  36177301 ttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 36177400  T
Q  356 tcaa 359  Q
    ||||    
T  36177401 tcaa 36177404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 39690581 - 39690478
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||  ||||    
T  39690581 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatt 39690482  T
Q  356 tcaa 359  Q
    ||||    
T  39690481 tcaa 39690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 5845239 - 5845300
Alignment:
Q  310 aaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||| ||||||| ||||||  || || ||||||||||||||||||||||| ||||||||||    
T  5845239 aaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaatacaagttagta 5845300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 30317840 - 30317873
Alignment:
Q  338 aatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||||||||||||||||||||||||||||    
T  30317840 aatttgacttttcatatttcaatgcaagttagta 30317873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 20946096 - 20946211
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||| |||| || || | |||| |||| || ||||||||| ||  |||  ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  20946096 ttaagaaacgttgttagtgcaattaacgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 20946195  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  20946196 tcaaaacaagttagta 20946211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 4857567 - 4857489
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatattt 356  Q
    ||||||||| || ||| ||||| ||  |||||||||| ||||||| ||||||  || || |||||||||||||||||||    
T  4857567 ttaatgtgtctattttatgtgttaatattactaaattgtcatttgtttgtatgtgtattaaatttgacttttcatattt 4857489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 10934097 - 10934131
Alignment:
Q  338 aatttgacttttcatatttcaatgcaagttagtaa 372  Q
    ||||||||||||||||||||||| |||||||||||    
T  10934097 aatttgacttttcatatttcaatacaagttagtaa 10934131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 16188 - 16095
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||| | || ||| ||||||||  |||||||||| || |||| ||||||  || || |||||||||||||| |||||||  ||||||||||    
T  16188 ttaatgtatctattttttgtgtgaatattactaaattgtcctttgtttgtatttgtattaaatttgacttttcacatttcaagacaagttagta 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 3559100 - 3559019
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||||||    
T  3559100 ttaatgtgtctattttgtgtgttaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaa 3559019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 8718000 - 8717951
Alignment:
Q  310 aaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||| ||||||| ||||||| || || ||||||||||||||||||||||    
T  8718000 aaattgtcatttgtttgtatatgtattaaatttgacttttcatatttcaa 8717951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 21912127 - 21912232
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    ||||||||||||||| || |||||||||||||| || ||| ||||| ||  ||| |||||| || |||| ||||||  || || | ||||||||||  ||    
T  21912127 tattaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattattaaattgtcttttgtttgtatgtgtattaagtttgactttttgta 21912226  T
Q  354 tttcaa 359  Q
    ||||||    
T  21912227 tttcaa 21912232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 4745136 - 4745236
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||| | || || | |||||||||||| |||||| || ||  |||| ||||| ||||||| ||||||  || || |||||||||||| |||||    
T  4745136 ttaagaaaagtagttagtgcaattaatgtgtttattttgtgggttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatatt 4745235  T
Q  356 t 356  Q
    |    
T  4745236 t 4745236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 32848611 - 32848706
Alignment:
Q  276 agttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||||||||||||||||||| |||||| ||||||||||| || |||| ||| ||   | |||||||||| |||||||||||||||| || ||||||    
T  32848611 agttaatgtgtttaatttgtatgtgaattttactaaattgtcttttgtttgcatgtctatttaatttgaattttcatatttcaatgaaaattagta 32848706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 35055816 - 35055909
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| || ||||||||| ||  |||| ||||| ||||||||||||||  || || |||||||||||| |||||||||| ||||||||||    
T  35055816 ttaatgtgtctattttgtgtgttaatattaccaaattgtcatttgcttgtatgtgtattaaatttgactttttatatttcaatacaagttagta 35055909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 255 - 371
Target Start/End: Original strand, 383613 - 383729
Alignment:
Q  255 attaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatat 354  Q
    |||||||||| |||||| |||||| ||| | | || |||||||||||| ||||||||||| ||||||| || |||  || |||||||| |||||||| ||    
T  383613 attaagaaaaattggtagtgtagtcaatatatctagtttgtgtgtgaattttactaaattatcatttgtttatatgtgtatttaatttaacttttcacat 383712  T
Q  355 ttcaatgcaagttagta 371  Q
    |  ||| ||||||||||    
T  383713 tctaatacaagttagta 383729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 38668624 - 38668523
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    ||||||||||| |  ||| |||||||||||| |||| |||||||||||| ||||||||||| ||||||  || |||  || ||||||||| |||||| ||    
T  38668624 tattaagaaaaatcagtagtgtagttaatgtatttagtttgtgtgtgaattttactaaattgtcatttatttatatgtgtatttaatttgtcttttcgta 38668525  T
Q  354 tt 355  Q
    ||    
T  38668524 tt 38668523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 47916189 - 47916320
Alignment:
Q  240 actaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaa 339  Q
    ||||||||||   ||||| |||||||||| || |||| ||||| |||||| ||||||| |||| || |||||||| ||||| | ||||||  || |||||    
T  47916189 actaatttcatatatattgagaaaagttgatagtgtaattaatatgtttagtttgtgtatgaatttgactaaattatcattagtttgtatgtgtatttaa 47916288  T
Q  340 tttgacttttcatatttcaatgcaagttagtaa 372  Q
    || || ||||  ||||||||| |||||||||||    
T  47916289 ttcgatttttt-tatttcaatacaagttagtaa 47916320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 12077841 - 12077738
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  12077841 ttaagaaaagttgtcagtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 12077742  T
Q  356 tcaa 359  Q
    ||||    
T  12077741 tcaa 12077738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 14645987 - 14645872
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||||||||| ||  |||| ||||| | ||||| ||||||  || || ||||||| |||||| |||    
T  14645987 ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgtttgtatgtgtattaaatttgatttttcaaatt 14645888  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  14645887 tcaagacaagttagta 14645872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 44083635 - 44083738
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || |||| ||||||| | || ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  44083635 ttaagaaaaattgttattgtaattaatgtatctattttgtgtgttaatattaccaaattatcatttgtttgtatgtgtattaaatttgacttttcatatt 44083734  T
Q  356 tcaa 359  Q
    ||||    
T  44083735 tcaa 44083738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 20945398 - 20945283
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||| ||||| ||  ||||  |||| || |||| ||||||  || || ||||||||||||||||||    
T  20945398 ttaagaaaagttgttagtgtaattaatgtgtctattttatgtgttaatattacctaattatcctttgtttgtatgtgtattaaatttgacttttcatatt 20945299  T
Q  356 tcaatgcaagttagta 371  Q
    | ||  ||||||||||    
T  20945298 ttaagacaagttagta 20945283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 22659588 - 22659691
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || | || ||||||| |||| ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||| ||||||||||||    
T  22659588 ttaagaaaagttgttagtataattaatgtatttattttgtgtgttaatattaccaaattatcttttgtttgtatgtgtattaaatttaacttttcatatt 22659687  T
Q  356 tcaa 359  Q
    ||||    
T  22659688 tcaa 22659691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 33287874 - 33287989
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||| ||| |||| ||||| ||| || ||||||||| ||  ||| |||||| || |||| |||| |  || || |||||||||||| |||||    
T  33287874 ttaagaaaagtttgtagtgtaattaatttgtctattttgtgtgttaatattattaaattgtcctttgtttgtttgtgtattaaatttgactttttatatt 33287973  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  33287974 tcaagacaagttagta 33287989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 26243497 - 26243583
Alignment:
Q  273 tgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    |||| ||||| |||||  ||||||||| ||  ||| |||||| ||||||| ||||||  || || ||||||||||||||||||||||    
T  26243497 tgtaattaatatgtttgttttgtgtgttaatgttattaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaa 26243583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 27697249 - 27697128
Alignment:
Q  207 tacttcttttgtcccttaatataagcacctatgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaattt 306  Q
    |||| |||| |||||||| ||||| | ||| | |||||||| |  |||||||| ||||||||||| | || | ||||||| || ||| | |||||| |||    
T  27697249 tactcctttcgtcccttattataaccccct-taactaatttaatacatattaaaaaaagttggtagtatactcaatgtgtctagtttatatgtgaatttt 27697151  T
Q  307 actaaattctcatttgcttgtat 329  Q
    |||||||| ||||||| ||||||    
T  27697150 actaaattatcatttgtttgtat 27697128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 50363084 - 50363150
Alignment:
Q  305 ttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||| ||||| ||||||| ||||||  || || ||||||||||||||||||||||  ||||||||||    
T  50363084 ttaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagta 50363150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 21932956 - 21933037
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||||||    
T  21932956 ttaatgtgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgtgtgttaaatttgacttttcatatttcaa 21933037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 33411991 - 33411958
Alignment:
Q  338 aatttgacttttcatatttcaatgcaagttagta 371  Q
    |||||| |||||||||||||||||||||||||||    
T  33411991 aatttgtcttttcatatttcaatgcaagttagta 33411958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 48903183 - 48903078
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    ||||||||||| | | || || | ||||| ||| || ||||||||| ||  |||||||||| ||||||| |||||||  | || |||||||||||| |||    
T  48903183 tattaagaaaaatagttagtgcaattaatttgtctattttgtgtgttaatattactaaattgtcatttgtttgtatatatattaaatttgacttttaata 48903084  T
Q  354 tttcaa 359  Q
    ||||||    
T  48903083 tttcaa 48903078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 11071677 - 11071780
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || || | ||||||||| |||||| ||||| ||  |||||||||| || |||||||||||  || || ||||||||||||||||||    
T  11071677 ttaagaaaagttgttagtgcaattaatgtgtctaatttatgtgttaatattactaaattgtcctttgcttgtatgtgtattaaatttgacttttcatatt 11071776  T
Q  356 tcaa 359  Q
    ||||    
T  11071777 tcaa 11071780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 1604428 - 1604312
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtcttt 337  Q
    ||||||||||||  || | |||||||| |||| | |||||||||| ||| |||||| |||||||| |||| ||| || || |||| |||||  ||| |||    
T  1604428 tgactaatttcacacacactaagaaaaattggcagtgtagttaatatgtctaatttatgtgtgaattttattaatttgtcctttgtttgtacgcgtattt 1604329  T
Q  338 aatttgacttttcatat 354  Q
    |||||||||||| ||||    
T  1604328 aatttgactttttatat 1604312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 17251057 - 17250954
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || | || ||||||||| |  ||||||||| ||  |||| ||||| ||||||| ||||||  || ||||| |||||||||||||||    
T  17251057 ttaagaaaagttgttagtataattaatgtgtctgttttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtatttaaattgacttttcatatt 17250958  T
Q  356 tcaa 359  Q
    ||||    
T  17250957 tcaa 17250954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 21012862 - 21012977
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || || | |||||||||||| ||||||||| ||  |||  ||||| || |||| |||||| | | || |||||||||||| |||||    
T  21012862 ttaagaaaagttgttagtgcaattaatgtgtttattttgtgtgttaatattatcaaattatcctttgtttgtatgcatattaaatttgactttttatatt 21012961  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  21012962 tcaaaacaagttagta 21012977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 37355045 - 37355148
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| |  |||| ||||||||| |  ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||    
T  37355045 ttaagaaaagttgtttgtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 37355144  T
Q  356 tcaa 359  Q
    ||||    
T  37355145 tcaa 37355148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 367
Target Start/End: Complemental strand, 40346177 - 40346066
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| |  || | |||||||||| | ||||||||| ||  |||||||||| || |||  ||||||  || || ||||||||||||||||||    
T  40346177 ttaagaaaagttgtttgtgcaattaatgtgttcattttgtgtgttaatattactaaattgtcttttatttgtatgtgtattaaatttgacttttcatatt 40346078  T
Q  356 tcaatgcaagtt 367  Q
    |||| |||||||    
T  40346077 tcaaggcaagtt 40346066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 3645332 - 3645447
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || | || ||||||||| || ||||||| | ||  |||||||||| || || | |||| |   | || ||||||||||||||||||    
T  3645332 ttaagaaaagttgttagtttacttaatgtgtctattttgtgtattaatattactaaattgtccttcgtttgtgtgtatattaaatttgacttttcatatt 3645431  T
Q  356 tcaatgcaagttagta 371  Q
    |||| |||||||||||    
T  3645432 tcaaggcaagttagta 3645447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 24774874 - 24774989
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||  || |||| ||||||| | || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  24774874 ttaagaaaatttattagtgtaattaatgtatctattttgtgtgttaatattaccaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatt 24774973  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  24774974 tcaagacaagttagta 24774989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 35178889 - 35178774
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||||||||||||| |  ||||||||  ||  |||| ||||| || |||  ||||||  || || ||||||||||||||||||    
T  35178889 ttaagaaaagttgtcagtgtagttaatgtgtatgttttgtgtgataatattacgaaattgtcttttatttgtatttgtattaaatttgacttttcatatt 35178790  T
Q  356 tcaatgcaagttagta 371  Q
    |||| ||||| |||||    
T  35178789 tcaaggcaagatagta 35178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 44424604 - 44424707
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| |  ||||| ||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  44424604 ttaagaaaagttgttagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttgtttgtatgtgtattaaatttgacttttcatatt 44424703  T
Q  356 tcaa 359  Q
    ||||    
T  44424704 tcaa 44424707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 3237746 - 3237835
Alignment:
Q  270 taatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||| ||||||||| |  ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||||||    
T  3237746 taatgtaattaatgtgtctgttttgtgtgttaatattacaaaattatcctttgtttgtatgtgtattaaatttgacttttcatatttcaa 3237835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 4398620 - 4398547
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtat 329  Q
    ||||||||||||| || |||| ||||||||| || ||||||||| ||  |||| ||||| ||||||| ||||||    
T  4398620 ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattacgaaattgtcatttgtttgtat 4398547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 26512102 - 26512183
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    |||||||||||| ||| ||||| ||  |||||||||| || |||| ||||||  || || |||||||||||| |||||||||    
T  26512102 ttaatgtgtttattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttatatttcaa 26512183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 28265047 - 28264935
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| |||||||||||  |||||| || ||  |||| ||||| ||||||| ||||||   | || ||||||||| ||||||||    
T  28265047 ttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgcgttaatattaccaaattgtcatttgtttgtatgtatattaaatttgactattcatatt 28264948  T
Q  356 tcaatgcaagtta 368  Q
    ||||  |||||||    
T  28264947 tcaagacaagtta 28264935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Complemental strand, 45150832 - 45150732
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| |  || | |||||||||| | ||||||||| ||  ||||| |||| || |||| ||||||  || || ||||||||||||||||||    
T  45150832 ttaagaaaagttgtttgtgcaattaatgtgttcattttgtgtgttaatattactcaattgtcctttgtttgtatgtgtattaaatttgacttttcatatt 45150733  T
Q  356 t 356  Q
    |    
T  45150732 t 45150732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 2342912 - 2343027
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||| ||| || | || ||||||||| || ||||||||| ||  |||| ||||| || |||| |||| |  || || ||||||||||||||||||    
T  2342912 ttaagaaaaattgttagtttacttaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgtgtgtgtattaaatttgacttttcatatt 2343011  T
Q  356 tcaatgcaagttagta 371  Q
    |||| |||||||||||    
T  2343012 tcaaggcaagttagta 2343027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 4081934 - 4082049
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||  ||||| | |||||||||||| ||||| ||| ||  |||||||||| |||||||  |||||  || || ||||||| ||||||||||    
T  4081934 ttaagaaaagttattaatgcaattaatgtgtttagtttgtatgttaatattactaaattatcatttgtctgtatgtgtattaaatttgatttttcatatt 4082033  T
Q  356 tcaatgcaagttagta 371  Q
    | ||  ||||||||||    
T  4082034 taaagacaagttagta 4082049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 4813557 - 4813454
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| ||||| | ||||||||| || ||||||||| ||  |||| ||||| |  |||| ||||||  || || ||||||||||||||||||    
T  4813557 ttaagaaaagttgttaatgcaattaatgtgtctattttgtgtgttaatattaccaaattattctttgtttgtatgtgtgttaaatttgacttttcatatt 4813458  T
Q  356 tcaa 359  Q
    ||||    
T  4813457 tcaa 4813454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 8984756 - 8984653
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||| ||| ||| || |||| ||||||||| |  ||||||||| ||  |||||||||| ||||||| ||||||  || || ||||||||||||||||||    
T  8984756 ttaaggaaaattgttagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatt 8984657  T
Q  356 tcaa 359  Q
    ||||    
T  8984656 tcaa 8984653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 15512876 - 15512773
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||  ||||    
T  15512876 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatt 15512777  T
Q  356 tcaa 359  Q
    ||||    
T  15512776 tcaa 15512773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 22786830 - 22786731
Alignment:
Q  253 atattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcat 352  Q
    |||||||||||| | |||| |||||||||||||| || ||||||| | || ||||||||||| || ||||||| ||   || |||||||| |||||||||    
T  22786830 atattaagaaaaatcggtagtgtagttaatgtgtctagtttgtgtattaattttactaaattatcttttgcttttaggtgtatttaatttaacttttcat 22786731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 23982687 - 23982584
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  |||||| ||||||||| |  ||||||||| ||  |||  |||||  |||||| ||||||| || || ||||||||||||||||||    
T  23982687 ttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaatattatcaaattgacatttgtttgtatatgtattaaatttgacttttcatatt 23982588  T
Q  356 tcaa 359  Q
    ||||    
T  23982587 tcaa 23982584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 28949059 - 28948956
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||||||||||||| || ||| ||||| ||  |||||||||| || |||| ||||||  || || ||||||||||||  ||||    
T  28949059 ttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgtgtattaaatttgactttttgtatt 28948960  T
Q  356 tcaa 359  Q
    ||||    
T  28948959 tcaa 28948956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 370
Target Start/End: Complemental strand, 17426834 - 17426706
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtcttt 337  Q
    ||||||||||||  ||||||||||||||| |||| ||||| |||| | |  |||||||||||||| ||||||||||| || ||||  | |||  || |||    
T  17426834 tgactaatttca--catattaagaaaagtaggtagtgtagataatatatcaaatttgtgtgtgaattttactaaattgtcctttg--tttatgtgtattt 17426739  T
Q  338 aatttgacttttcatatttcaatgcaagttagt 370  Q
    |||||  ||||| ||||| |||||||| |||||    
T  17426738 aattttcctttttatattccaatgcaatttagt 17426706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 28723748 - 28723650
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatat 354  Q
    ||||||||||||| || |||| ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || |||||||||||||||||    
T  28723748 ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcttttgtttgtatgtgtattaaatttgacttttcatat 28723650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 47071039 - 47070941
Alignment:
Q  273 tgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    |||| ||||||||| || ||| ||||| ||  |||| ||||| ||||||| |||||| ||| || ||||||| ||||||||||||||  ||||||||||    
T  47071039 tgtaattaatgtgtctattttatgtgttaatattaccaaattgtcatttgtttgtatgcgtattaaatttgatttttcatatttcaagacaagttagta 47070941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 372
Target Start/End: Complemental strand, 15911647 - 15911531
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||||||||| ||  |||| ||||   |||||| ||||||  || || ||| |||| |||||||||    
T  15911647 ttaagaaaagttgttagtgtacttaatgtgtctattttgtgtgttaatattaccaaataaccatttgtttgtatgtgtattaaatgtgacatttcatatt 15911548  T
Q  356 tcaatgcaagttagtaa 372  Q
    ||||  |||||||||||    
T  15911547 tcaagacaagttagtaa 15911531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 5085184 - 5085081
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||||||||||  | |||| ||||||||| |  ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  5085184 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcttttgtttgtatgtgtattaaatttgacttttcatatt 5085085  T
Q  356 tcaa 359  Q
    ||||    
T  5085084 tcaa 5085081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 13723573 - 13723470
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || || | ||||||||| || ||||||| | ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  13723573 ttaagaaaagttgttagtgcaattaatgtgtctattttgtgtattaatattaccaaattatcctttgtttgtatgtgtattaaatttgacttttcatatt 13723474  T
Q  356 tcaa 359  Q
    ||||    
T  13723473 tcaa 13723470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 20564783 - 20564898
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || ||||  |||||||| || ||| ||||| ||  |||| ||||| || |||| ||| ||  || || ||||||||||||||||||    
T  20564783 ttaagaaaagttgatagtgtaactaatgtgtctactttatgtgttaatattacaaaattgtcttttgtttgaatgtgtattaaatttgacttttcatatt 20564882  T
Q  356 tcaatgcaagttagta 371  Q
    ||||  ||||||||||    
T  20564883 tcaagacaagttagta 20564898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 34031471 - 34031384
Alignment:
Q  238 tgactaatttcagccatattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgctt 325  Q
    ||||||||||||   ||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||  ||||| |||| || |||||||    
T  34031471 tgactaatttcactaatattgagaaaggttggtagtgtagttaacgtgtttattttgtatgtgaatattacttaattgtcctttgctt 34031384  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 38680483 - 38680586
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||||||||| ||  |||  ||||| ||||||| ||||||  || || |||||| |||| ||||||    
T  38680483 ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgtgtattaaatttgtctttgcatatt 38680582  T
Q  356 tcaa 359  Q
    ||||    
T  38680583 tcaa 38680586  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 51390607 - 51390517
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||| || ||||||||| |   |||| ||||| ||||||| ||||||  || || ||||||||||||||||||||||  ||||||||||    
T  51390607 ttaatgtgtctattttgtgtgtta---ttaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagta 51390517  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 8877802 - 8877883
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    |||||||||||  ||||||||| ||  |||| ||||| ||||||| ||||||  || || |||||||||||| |||||||||    
T  8877802 ttaatgtgtttgttttgtgtgttaatattacgaaattgtcatttgtttgtatgtgtattaaatttgactttttatatttcaa 8877883  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 23393607 - 23393498
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| ||||||| ||||||| | || ||||||| |  |||||| |||||| ||||||| ||||||  || | | |||||||| ||||||||    
T  23393607 ttaagaaaagttgttaatgtaattaatgtatctattttgtgtat-taatttattaaattgtcatttgtttgtat--gtgtattatttgactattcatatt 23393511  T
Q  356 tcaatgcaagtta 368  Q
    ||||  |||||||    
T  23393510 tcaagacaagtta 23393498  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 31305324 - 31305429
Alignment:
Q  254 tattaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcata 353  Q
    ||||||||||||||| |  |||| ||||||||| || ||||| ||  ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||    
T  31305324 tattaagaaaagttgttggtgtaattaatgtgtctattttgtatgctaatattaccaaattgtcctttgtttgtatgtgtattaaatttgacttttcata 31305423  T
Q  354 tttcaa 359  Q
    ||||||    
T  31305424 tttcaa 31305429  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 32047450 - 32047552
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgac-ttttcatat 354  Q
    |||||||||||||  | |||| |||||||||||  ||||||||| ||  |||| ||||| ||||||| ||||||  || || |||||||| |||||||||    
T  32047450 ttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattacgaaattgtcatttgtttgtat--gtgttaaatttgactttttcatat 32047547  T
Q  355 ttcaa 359  Q
    |||||    
T  32047548 ttcaa 32047552  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 47754715 - 47754634
Alignment:
Q  278 ttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| || ||| ||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||||||    
T  47754715 ttaatgtgtctattttttgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaa 47754634  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 24415043 - 24415111
Alignment:
Q  291 tttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatttcaa 359  Q
    ||||||||| ||  |||| ||||| ||||||| ||||||  || || ||||||||||||||||||||||    
T  24415043 tttgtgtgttaatattaccaaattatcatttgtttgtatgtgtattaaatttgacttttcatatttcaa 24415111  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 32152166 - 32152266
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| |  || | ||||||||| || ||||||||| ||  |||| ||||| | ||||| ||||||  || || ||||||||||||||||||    
T  32152166 ttaagaaaagttgttggtgcaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgtttgtatgtgtattaaatttgacttttcatatt 32152265  T
Q  356 t 356  Q
    |    
T  32152266 t 32152266  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34028517 - 34028481
Alignment:
Q  335 tttaatttgacttttcatatttcaatgcaagttagta 371  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  34028517 tttaatttgacttttcatattccaaggcaagttagta 34028481  T

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Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 2942 - 2889
Alignment:
Q  261 aaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaatt 314  Q
    |||||||| ||||||||||||| |||| | |||||||||||| |||||||||||    
T  2942 aaaagttgataatgtagttaatctgttaagtttgtgtgtgaattttactaaatt 2889  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 214627 - 214727
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    ||||||||||||| || |||| ||||||||| || ||| ||||| ||  |||| ||||| ||||||| ||||||  || || |||||||||||| |||||    
T  214627 ttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgtcatttgtttgtatgtgtattaaatttgactttttatatt 214726  T
Q  356 t 356  Q
    |    
T  214727 t 214727  T

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Target: scaffold1091 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 2009 - 1910
Alignment:
Q  256 ttaagaaaagttggtaatgtagttaatgtgtttaatttgtgtgtgaaatttactaaattctcatttgcttgtatacgtctttaatttgacttttcatatt 355  Q
    |||||| |||||| || |||| ||||||||| || ||||||||| ||  |||| ||||| || |||| ||||||  || || ||||||||||||||||||    
T  2009 ttaagataagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgtgtattaaatttgacttttcatatt 1910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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