View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0311-INSERTION-5 (Length: 562)

Name: NF0311-INSERTION-5
Description: NF0311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0311-INSERTION-5
NF0311-INSERTION-5
[»] chr8 (12 HSPs)
chr8 (7-186)||(13520609-13520788)
chr8 (7-186)||(13610144-13610323)
chr8 (380-556)||(13520787-13520960)
chr8 (380-556)||(13610322-13610495)
chr8 (1-145)||(39972132-39972276)
chr8 (3-146)||(35236949-35237092)
chr8 (7-121)||(5216985-5217099)
chr8 (7-127)||(8810490-8810609)
chr8 (21-115)||(7475822-7475916)
chr8 (13-115)||(36766656-36766759)
chr8 (2-146)||(5074817-5074961)
chr8 (27-80)||(43285216-43285269)
[»] chr2 (9 HSPs)
chr2 (1-146)||(29260107-29260252)
chr2 (3-146)||(34512633-34512776)
chr2 (1-121)||(14120827-14120946)
chr2 (1-115)||(5671514-5671628)
chr2 (1-121)||(1729470-1729589)
chr2 (479-556)||(44469576-44469652)
chr2 (16-116)||(747500-747600)
chr2 (477-545)||(6220865-6220933)
chr2 (17-67)||(19851673-19851723)
[»] chr1 (7 HSPs)
chr1 (7-121)||(40289085-40289199)
chr1 (2-121)||(21268296-21268414)
chr1 (3-116)||(12381187-12381298)
chr1 (3-116)||(12385254-12385365)
chr1 (1-146)||(27934998-27935143)
chr1 (69-147)||(48938688-48938766)
chr1 (6-145)||(10832183-10832322)
[»] chr4 (7 HSPs)
chr4 (1-145)||(39418098-39418242)
chr4 (36-151)||(2940213-2940328)
chr4 (5-104)||(10567300-10567399)
chr4 (19-146)||(3769816-3769943)
chr4 (3-116)||(49483084-49483197)
chr4 (61-116)||(11996112-11996167)
chr4 (518-554)||(25220020-25220056)
[»] chr3 (10 HSPs)
chr3 (3-146)||(50673068-50673210)
chr3 (11-115)||(43451517-43451621)
chr3 (8-145)||(29213340-29213477)
chr3 (1-116)||(12060068-12060183)
chr3 (1-121)||(51877250-51877370)
chr3 (1-115)||(17073070-17073189)
chr3 (8-105)||(4298329-4298427)
chr3 (36-145)||(20256068-20256177)
chr3 (20-70)||(45503360-45503410)
chr3 (477-538)||(49682248-49682310)
[»] chr7 (5 HSPs)
chr7 (3-97)||(49045272-49045366)
chr7 (518-556)||(47754512-47754550)
chr7 (20-121)||(27236813-27236914)
chr7 (1-57)||(41084783-41084839)
chr7 (17-97)||(5543047-5543127)
[»] chr5 (4 HSPs)
chr5 (23-129)||(24288494-24288600)
chr5 (23-129)||(24373621-24373727)
chr5 (36-121)||(12349548-12349633)
chr5 (69-146)||(6061515-6061592)
[»] chr6 (4 HSPs)
chr6 (1-121)||(32251338-32251457)
chr6 (1-146)||(31490664-31490814)
chr6 (1-121)||(26539097-26539218)
chr6 (16-121)||(28014635-28014740)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 13520609 - 13520788
Alignment:
Q  7 aaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattta 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  13520609 aaaaaatggtaagtttgtattgaatttagcaattttttaacttttcaaaagccaaatctattacttttcaccatatcctactacaacatttctaaattta 13520708  T
Q  107 tcctcttaactaatgtctaaaggacactttttagcatttcacatattatttatgcatgtggtcaagtgtatttgtgcatc 186  Q
    |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13520709 tccttttaaccaatgtcttaaggacactttttagcatttcccatattatttatgcatgtggtcaagtgtatttgtgcatc 13520788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 13610144 - 13610323
Alignment:
Q  7 aaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattta 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  13610144 aaaaaatggtaagtttgtattgaatttagcaattttttaacttttcaaaagccaaatctattacttttcaccatatcctactacaacatttctaaattta 13610243  T
Q  107 tcctcttaactaatgtctaaaggacactttttagcatttcacatattatttatgcatgtggtcaagtgtatttgtgcatc 186  Q
    |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13610244 tccttttaaccaatgtcttaaggacactttttagcatttcccatattatttatgcatgtggtcaagtgtatttgtgcatc 13610323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 380 - 556
Target Start/End: Original strand, 13520787 - 13520960
Alignment:
Q  380 tctctacttaaaccttgaaaaatttcgttcatgtctaaattttattaaactttattgattatatnnnnnnnnttgtcctcgtgcatctagtatttttaag 479  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||| ||| ||||||||| | ||||||||    
T  13520787 tctctacttaaaccttaaaaaatttcgttcatgtctaaattttattaaactttattgattatat-aaaaaaattgcccttgtgcatctaat-tttttaag 13520884  T
Q  480 ggaaatgttaatgaatgtcctgagatactttttaaaaactttaactagtaaatttttatgagaattattgtatttaa 556  Q
    | ||||||| | || ||  |||  | ||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  13520885 gaaaatgtt-acgattgctctggaacactttttaagaactttaaatagaaaatttttatgagaattattgtatttaa 13520960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 380 - 556
Target Start/End: Original strand, 13610322 - 13610495
Alignment:
Q  380 tctctacttaaaccttgaaaaatttcgttcatgtctaaattttattaaactttattgattatatnnnnnnnnttgtcctcgtgcatctagtatttttaag 479  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||| ||| ||||||||| | ||||||||    
T  13610322 tctctacttaaaccttaaaaaatttcgttcatgtctaaattttattaaactttattgattatat-aaaaaaattgcccttgtgcatctaat-tttttaag 13610419  T
Q  480 ggaaatgttaatgaatgtcctgagatactttttaaaaactttaactagtaaatttttatgagaattattgtatttaa 556  Q
    | ||||||| | || ||  |||  | ||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  13610420 gaaaatgtt-acgattgctctggaacactttttaagaactttaaatagaaaatttttatgagaattattgtatttaa 13610495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39972276 - 39972132
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| ||||||  || ||||| |||||||| | |||||||||||||||| ||||| | |||  || |||||||||||| ||||| |||||||||||||    
T  39972276 ggaaaccaaaaatagtatgtttgcattgaattgaacaattttttaacttttaaaaagtcaaattcatcacttttcaccatttcccaatacaacatttcta 39972177  T
Q  101 aatttatcctcttaactaatgtctaaaggacactttttagcattt 145  Q
    ||||| || ||||||| |||| |  |||| |||| ||||||||||    
T  39972176 aatttgtcttcttaaccaatgccctaagggcactctttagcattt 39972132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 35237092 - 35236949
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||    ||| ||| |||||||||||  |  || |||||||||||||||    
T  35237092 aaacaaaaaatgataagtttgcattgaatttagcgattttataactttttaaaaagtaaatttatcacttttcaccacttttcaatacaacatttctaaa 35236993  T
Q  103 tttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    |||||| |||| || |||  || |||| |||| ||||| |||||    
T  35236992 tttatcatcttgaccaataccttaagggcactctttagtatttc 35236949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 5217099 - 5216985
Alignment:
Q  7 aaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattta 106  Q
    |||||||| ||||||||  ||||||||| |||||||||||||||| ||||| |  ||||||  ||||||||  | |  || |||||||||||||||||||    
T  5217099 aaaaaatggtaagtttgcgttgaatttaacaattttttaacttttaaaaagtcagatctatcgcttttcacagtttttcaatacaacatttctaaattta 5217000  T
Q  107 tcctcttaactaatg 121  Q
    |||| ||||||||||    
T  5216999 tccttttaactaatg 5216985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 8810490 - 8810609
Alignment:
Q  7 aaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattta 106  Q
    ||||| ||||||||||| ||| |||  |  |||||||||| |||| |||||   |||||||||||||||||||| ||||| |||||||||| |||||||     
T  8810490 aaaaattgataagtttgcattaaatacaataattttttaatttttaaaaagttaaatctattacttttcaccatttcccaatacaacattt-taaatttg 8810588  T
Q  107 tcctcttaactaatgtctaaa 127  Q
    || ||||||||||||| ||||    
T  8810589 tcatcttaactaatgtttaaa 8810609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 7475822 - 7475916
Alignment:
Q  21 ttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaa 115  Q
    |||||||| ||| | ||||||||||| |||||||||| | |||||||   |||||||||| || || ||||||||||||||||||||||| ||||    
T  7475822 ttgtattggattaaacaattttttaagttttcaaaagtcaaatctatcgtttttcaccatttctcaatacaacatttctaaatttatccttttaa 7475916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 36766759 - 36766656
Alignment:
Q  13 tgataagtttgtattgaatttagcaattttttaactttt-caaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctc 111  Q
    ||||||||||| ||| ||||||  ||||||||||||||| |||| | | ||||||| | |||| | ||| |  || ||||||||||||||||||||||||    
T  36766759 tgataagtttgcattaaatttaataattttttaactttttcaaacgtcaaatctatcattttttatcatttttcaatacaacatttctaaatttatcctc 36766660  T
Q  112 ttaa 115  Q
    ||||    
T  36766659 ttaa 36766656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 5074817 - 5074961
Alignment:
Q  2 gaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaa 101  Q
    ||||| ||||||  |||||||| | |||||| | |||||||||||||||  ||||| | | ||||| | |||||| ||| | ||| ||||||||||||||    
T  5074817 gaaactaaaaatagtaagtttgcactgaattcaacaattttttaactttaaaaaagtcaattctataatttttcaacattttccaatacaacatttctaa 5074916  T
Q  102 atttatcctcttaactaatg-tctaaaggacactttttagcatttc 146  Q
     ||| || ||||||| ||||  ||||||| |||| |||||||||||    
T  5074917 gtttgtcatcttaaccaatgccctaaagg-cactctttagcatttc 5074961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 43285216 - 43285269
Alignment:
Q  27 tgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccat 80  Q
    |||||| | |||||||||||||||||||||  | ||||||| ||||||||||||    
T  43285216 tgaattcaacaattttttaacttttcaaaaatcaaatctatcacttttcaccat 43285269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 29260252 - 29260107
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| |||||||||||||| | |||||||| | |||||||||||||||| ||||| | ||||||| |||||||||||| | ||| |||||||||||||    
T  29260252 ggaaaccaaaaatgataagttcgcattgaattcaacaattttttaactttttaaaagtcaaatctatcacttttcaccattttccagtacaacatttcta 29260153  T
Q  101 aatttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    | ||| || ||||||| ||||||| ||||||||| |||||||||||    
T  29260152 attttgtcttcttaacaaatgtcttaaggacactctttagcatttc 29260107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 34512633 - 34512776
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    |||| ||||||  ||||||||||||||||||| |||||||||||||||| ||||| | ||||||| |||||||||||| | | | |||||||||||||||    
T  34512633 aaactaaaaatagtaagtttgtattgaatttaacaattttttaacttttaaaaagtcaaatctatcacttttcaccattttctaatacaacatttctaaa 34512732  T
Q  103 tttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    ||| |||||||||| ||||||  |||| |||| |||| ||||||    
T  34512733 tttgtcctcttaaccaatgtcataagggcactctttaacatttc 34512776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 14120946 - 14120827
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| ||||||| ||| ||| ||||||||||| ||||||||||||| || ||||||  ||||||| |||||||||||| |  || |||||||||| ||    
T  14120946 ggaaactaaaaatggtaaatttatattgaatttaacaattttttaactattaaaaagctaaatctatcacttttcaccat-tttcaatacaacattttta 14120848  T
Q  101 aatttatcctcttaactaatg 121  Q
    ||||| |||||||||| ||||    
T  14120847 aatttgtcctcttaaccaatg 14120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 5671514 - 5671628
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    ||||| |||||||| |||||||| ||| |||| |  ||||||||||||||| ||||| | ||||||| |||||||||||| || || || ||||||||||    
T  5671514 ggaaataaaaaatggtaagtttgcattcaattcaagaattttttaactttttaaaagtcaaatctatcacttttcaccatttctcaataaaacatttcta 5671613  T
Q  101 aatttatcctcttaa 115  Q
    | |||||| ||||||    
T  5671614 attttatcttcttaa 5671628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 1729470 - 1729589
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| ||||||  |||| |||||||||||| | ||||||||||||||||| |||| | ||||||| | |||||||||| |  || |||||||||||||    
T  1729470 ggaaactaaaaatattaagcttgtattgaattcaacaattttttaacttttc-aaagtcaaatctatcatttttcaccatttttcaatacaacatttcta 1729568  T
Q  101 aatttatcctcttaactaatg 121  Q
    | ||| |||||||||| ||||    
T  1729569 agtttgtcctcttaaccaatg 1729589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 556
Target Start/End: Original strand, 44469576 - 44469652
Alignment:
Q  479 gggaaatgttaatgaatgtcctgagatactttttaaaaactttaactagtaaatttttatgagaattattgtatttaa 556  Q
    |||||||||||| || ||||||||| || ||||||| |  ||||| ||||||||||||||||||||||||||||||||    
T  44469576 gggaaatgttaacgagtgtcctgag-tattttttaagacttttaaatagtaaatttttatgagaattattgtatttaa 44469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 747600 - 747500
Alignment:
Q  16 taagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaa 115  Q
    |||||| | |||||||| | |||||||||||||||| |||||   ||||||| ||||||||| || | ||| |||||||||||||| ||| |||||||||    
T  747600 taagttggcattgaattcaacaattttttaacttttaaaaagttaaatctatcacttttcactattttccaatacaacatttctaagtttgtcctcttaa 747501  T
Q  116 c 116  Q
    |    
T  747500 c 747500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 6220933 - 6220865
Alignment:
Q  477 aagggaaatgttaatgaatgtcctgagatactttttaaaaactttaactagtaaatttttatgagaatt 545  Q
    |||||||||||||| |||||| |||||| ||| ||||||| |||||| |||||||||||||||| ||||    
T  6220933 aagggaaatgttaacgaatgttctgagacactgtttaaaagctttaaatagtaaatttttatgaaaatt 6220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 19851673 - 19851723
Alignment:
Q  17 aagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctat 67  Q
    |||||||||||||||| | |||||||||||||||| ||||| | |||||||    
T  19851673 aagtttgtattgaattcaacaattttttaacttttaaaaagtcaaatctat 19851723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 40289085 - 40289199
Alignment:
Q  7 aaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattta 106  Q
    |||||||| |||||||| |||||||| |  |||| |||||||||||||||| | ||||||| ||||||||| || ||||| |||||||||| ||||||||    
T  40289085 aaaaaatggtaagtttgcattgaattcaataattatttaacttttcaaaagtcaaatctatcacttttcactatttcccaatacaacatttttaaattta 40289184  T
Q  107 tcctcttaactaatg 121  Q
    |||||||||| ||||    
T  40289185 tcctcttaaccaatg 40289199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 21268414 - 21268296
Alignment:
Q  2 gaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaa 101  Q
    ||||| ||||||  ||| ||||||||||||| | |||||||||||||||| |||||   ||||||| | |||||||||| || || ||||||||||||||    
T  21268414 gaaactaaaaatagtaaatttgtattgaattcaacaattttttaactttt-aaaagttaaatctatcatttttcaccatttctcaatacaacatttctaa 21268316  T
Q  102 atttatcctcttaactaatg 121  Q
     ||| |||||||||| ||||    
T  21268315 gtttgtcctcttaaccaatg 21268296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 12381187 - 12381298
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    |||||||||||| |||||||  |||||||| | |||||||||||||||||||||| | ||||||| || |||||| || || || || ||||||| ||||    
T  12381187 aaacaaaaaatggtaagttt--attgaattcaacaattttttaacttttcaaaagtcaaatctatcacatttcactatttctcaatagaacatttttaaa 12381284  T
Q  103 tttatcctcttaac 116  Q
    | | ||||||||||    
T  12381285 tatctcctcttaac 12381298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 12385254 - 12385365
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    |||||||||||| |||||||  |||||||| | |||||||||||||||||||||| | ||||||| || |||||| || || || || ||||||| ||||    
T  12385254 aaacaaaaaatggtaagttt--attgaattcaacaattttttaacttttcaaaagtcaaatctatcacatttcactatttctcaatagaacatttttaaa 12385351  T
Q  103 tttatcctcttaac 116  Q
    | | ||||||||||    
T  12385352 tatctcctcttaac 12385365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 27935143 - 27934998
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||||||||||  ||||||||||||||||| | |||||||| ||||||| ||||  | |||| |||| |||||||||| | ||| ||||| |||| ||    
T  27935143 ggaaacaaaaaatagtaagtttgtattgaattcaacaatttttgaacttttaaaaaatcaaatccattatttttcaccattttccaatacaaaattttta 27935044  T
Q  101 aatttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    | ||| || | ||||| |||| |   ||| |||| |||||||||||    
T  27935043 agtttgtctttttaaccaatgccccgagggcactctttagcatttc 27934998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 48938688 - 48938766
Alignment:
Q  69 acttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgtctaaaggacactttttagcatttca 147  Q
    |||||||||||| | | | ||||| |||||||  |||||| |||||||||||| ||||||  |||| ||||||||||||    
T  48938688 acttttcaccattttctaatacaatatttctatttttatcatcttaactaatgcctaaagagcactctttagcatttca 48938766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 10832322 - 10832183
Alignment:
Q  6 caaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaattt 105  Q
    ||||||||  |||||||| |||||||| | |||||||||||||||| ||||  | ||||||  | |||||||||| | ||| || || |||| ||| |||    
T  10832322 caaaaaatagtaagtttgaattgaattcaacaattttttaacttttaaaaaatcaaatctagcaattttcaccattttccaatataaaatttttaagttt 10832223  T
Q  106 atcctcttaactaatg-tctaaaggacactttttagcattt 145  Q
    ||| |||| || |||| ||| |||| |||| ||||||||||    
T  10832222 atcttctttaccaatgctct-aagggcactctttagcattt 10832183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39418242 - 39418098
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||||||||||| |||||||||||| |||| | |||||||||||||||| ||||| | ||  ||| |||||| |||||   ||| |||||||||||||    
T  39418242 ggaaacaaaaaatggtaagtttgtattaaattcaacaattttttaacttttaaaaagtcaaacatatcactttttaccattatccaatacaacatttcta 39418143  T
Q  101 aatttatcctcttaactaatgtctaaaggacactttttagcattt 145  Q
    ||||| | |||||||| ||||||  ||||||||| |||| |||||    
T  39418142 aatttgtactcttaaccaatgtcctaaggacactctttaacattt 39418098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 2940328 - 2940213
Alignment:
Q  36 caattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgtctaaaggacactt 135  Q
    |||||||||||||||| ||||| | |||| |  | |||||||||| ||||| | |||||||||||||||| ||||||||||||||| |  |||| ||||     
T  2940328 caattttttaacttttaaaaagtcaaatcaaccatttttcaccatttcccaatgcaacatttctaaatttgtcctcttaactaatgccctaagggcacta 2940229  T
Q  136 tttagcatttcacata 151  Q
    ||||||||||| ||||    
T  2940228 tttagcatttcccata 2940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 10567399 - 10567300
Alignment:
Q  5 acaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatt 104  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||| ||||| | |||| || ||||| |||||| ||| | |||||||||| ||||||    
T  10567399 acaaaaaataataagtttgtattgaatttaacaattttttaatttttaaaaagtcaaatccatcactttccaccatttcctaatacaacatttttaaatt 10567300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 3769816 - 3769943
Alignment:
Q  19 gtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaacta 118  Q
    ||||| |||||||||| |||| ||||||||||| ||||| | ||| ||| |||||||||||| |  || | ||| ||||||||||||||||| ||||| |    
T  3769816 gtttgcattgaatttaacaatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatgcaatatttctaaatttatcctattaacca 3769915  T
Q  119 atgtctaaaggacactttttagcatttc 146  Q
    | ||   ||||||||| |||| ||||||    
T  3769916 aagttcgaaggacactctttaacatttc 3769943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 49483084 - 49483197
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    |||| ||||||  |||||||| |||||||| |  ||||||||||||||  ||||| | ||||||| |||||||||||| | ||| || ||  ||| ||||    
T  49483084 aaaccaaaaatagtaagtttgaattgaattcaataattttttaactttgaaaaagtcaaatctatcacttttcaccattttccaataaaatttttataaa 49483183  T
Q  103 tttatcctcttaac 116  Q
    |||||| |||||||    
T  49483184 tttatcttcttaac 49483197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 11996167 - 11996112
Alignment:
Q  61 aatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaac 116  Q
    ||||||| |||||||||||| | ||| |||||||||||||| ||| ||||||||||    
T  11996167 aatctatcacttttcaccattttccaatacaacatttctaagtttgtcctcttaac 11996112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 25220056 - 25220020
Alignment:
Q  518 ctttaactagtaaatttttatgagaattattgtattt 554  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  25220056 ctttaaatagtaaaattttatgagaattattgtattt 25220020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 50673068 - 50673210
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaa 102  Q
    ||||||||||||||||| ||| ||||||||  |||||||| |||||||| ||||| | ||||||| ||||||||| || ||||| |||||||||| ||||    
T  50673068 aaacaaaaaatgataagattgcattgaattctgcaatttt-taacttttaaaaagtcaaatctatcacttttcactatttcccaatacaacatttttaaa 50673166  T
Q  103 tttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    |||| | ||||||| |||| |  |||| |||| |||||||||||    
T  50673167 tttaccttcttaaccaatgccctaagggcactctttagcatttc 50673210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 43451517 - 43451621
Alignment:
Q  11 aatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcct 110  Q
    ||||||||||||| |||||||| |  ||||||||||||||||||||  | ||||||| ||||||||| || || || |||||||||||||||||| ||||    
T  43451517 aatgataagtttgcattgaattcaataattttttaacttttcaaaaatcaaatctatcacttttcacaatttctcattacaacatttctaaatttgtcct 43451616  T
Q  111 cttaa 115  Q
    |||||    
T  43451617 cttaa 43451621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 29213477 - 29213340
Alignment:
Q  8 aaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttat 107  Q
    ||||||| |||||||| |||||||| |||||||||||||||||| ||||| | ||||||| | |||||||||| |  || || ||| ||||||||||| |    
T  29213477 aaaaatggtaagtttgcattgaattcagcaattttttaacttttaaaaagtcaaatctatcatttttcaccatttttcaatataacgtttctaaatttgt 29213378  T
Q  108 cctcttaactaatgtctaaaggacactttttagcattt 145  Q
    ||| ||||| |||| |  ||||||||| |||| |||||    
T  29213377 cctattaaccaatgccctaaggacactctttaacattt 29213340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12060183 - 12060068
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| ||||||  |||||| | |||||||| | |||||||||||||||| ||||  | ||||||| |||||||| ||| | ||| ||||| |||||||    
T  12060183 ggaaactaaaaatagtaagttggcattgaattcaacaattttttaacttttaaaaactcaaatctatcacttttcatcattttccaatacaatatttcta 12060084  T
Q  101 aatttatcctcttaac 116  Q
    ||||| ||||||||||    
T  12060083 aatttgtcctcttaac 12060068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 51877250 - 51877370
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||| ||||||  | ||||||||||||||| ||||||||||| |||||| ||||  | ||| ||| |||||||||||| ||  | ||||| |||||||    
T  51877250 ggaaactaaaaatagttagtttgtattgaattcagcaatttttttacttttaaaaaatcaaatatatcacttttcaccatttctgaatacaatatttcta 51877349  T
Q  101 aatttatcctcttaactaatg 121  Q
    ||||| |||| ||||| ||||    
T  51877350 aatttgtccttttaaccaatg 51877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 17073189 - 17073070
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcc-----cactacaacat 95  Q
    |||||| ||||||  |||||||| |||||||| | || |||||||| |||||||||| | |||||||||||| ||||||| |||     || | ||||||    
T  17073189 ggaaaccaaaaatagtaagtttgcattgaattcaacatttttttaatttttcaaaagtcaaatctattacttgtcaccatttcccttttcaatgcaacat 17073090  T
Q  96 ttctaaatttatcctcttaa 115  Q
    ||||||||||||| ||||||    
T  17073089 ttctaaatttatcttcttaa 17073070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 4298329 - 4298427
Alignment:
Q  8 aaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcacca-tatcccactacaacatttctaaattt 105  Q
    |||||| ||||| |||  |||||||||| |||||||||| |||| ||||| | ||||||| ||||||||||| | | ||| |||||||||| |||||||    
T  4298329 aaaaataataagattgcgttgaatttagtaattttttaatttttaaaaagtcaaatctatcacttttcaccatttttccaatacaacatttttaaattt 4298427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 20256177 - 20256068
Alignment:
Q  36 caattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgtctaaaggacactt 135  Q
    |||||||||||||||| |||   | ||||||| ||||||||||||  || | |||||||||||| |||||||| ||||||  ||||||  ||||| |||     
T  20256177 caattttttaacttttaaaagatcaaatctatcacttttcaccattacctaatacaacatttctgaatttatcttcttaatcaatgtcataaggatactc 20256078  T
Q  136 tttagcattt 145  Q
    |||| |||||    
T  20256077 tttaacattt 20256068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 45503410 - 45503360
Alignment:
Q  20 tttgtattgaatttagcaattttttaacttttcaaaagccgaatctattac 70  Q
    ||||||||||||| | |||||||||||||||| ||||| | ||||||||||    
T  45503410 tttgtattgaattcaacaattttttaacttttaaaaagtcaaatctattac 45503360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 49682310 - 49682248
Alignment:
Q  477 aagggaaatgttaatgaatgtcctgaga-tactttttaaaaactttaactagtaaatttttat 538  Q
    |||||||||||||| ||||||||| ||| || |||||||  ||||||| ||||||||||||||    
T  49682310 aagggaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttat 49682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 49045272 - 49045366
Alignment:
Q  3 aaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacattt 97  Q
    |||||||||||| |||||||| |||||||| |  ||||||||||||||||||||| | || ||| ||||||||||||| ||| | ||||||||||    
T  49045272 aaacaaaaaatggtaagtttgcattgaattaaataattttttaacttttcaaaagtcaaaactaatacttttcaccatttcctaatacaacattt 49045366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 556
Target Start/End: Original strand, 47754512 - 47754550
Alignment:
Q  518 ctttaactagtaaatttttatgagaattattgtatttaa 556  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  47754512 ctttaaatagtaaatttttatgagaattattgtatttaa 47754550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 27236914 - 27236813
Alignment:
Q  20 tttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaa 119  Q
    ||||||||||||| | |||||||||||||||| | ||| | ||||||| | |||||| ||| | ||| ||||| |||| ||| ||| |||||||||| ||    
T  27236914 tttgtattgaattcaacaattttttaacttttaagaagtcaaatctatcatttttcatcattttccattacaatatttataagtttgtcctcttaaccaa 27236815  T
Q  120 tg 121  Q
    ||    
T  27236814 tg 27236813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41084783 - 41084839
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaag 57  Q
    ||||| ||||||||||||||||||||||| || |  ||||||||||||||| |||||    
T  41084783 ggaaataaaaaatgataagtttgtattgagttcaataattttttaacttttaaaaag 41084839  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 5543047 - 5543127
Alignment:
Q  17 aagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacattt 97  Q
    |||||||  ||||||| | |||||||||||||||| ||||| | ||| ||| |||||||||||| || || ||||| ||||    
T  5543047 aagtttgcgttgaattcaacaattttttaacttttaaaaagtcaaatatatcacttttcaccatttctcaatacaatattt 5543127  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 24288494 - 24288600
Alignment:
Q  23 gtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgt 122  Q
    |||||||||| | ||||||| |||||||| |||||   ||||||| |||||||||||| || || |||||||||||||| ||| |||||||||| |||||    
T  24288494 gtattgaattcaacaattttgtaacttttaaaaagttaaatctatcacttttcaccatttctcaatacaacatttctaagtttgtcctcttaaccaatgt 24288593  T
Q  123 ctaaagg 129  Q
    || ||||    
T  24288594 cttaagg 24288600  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 24373727 - 24373621
Alignment:
Q  23 gtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgt 122  Q
    |||||||||| | ||||||| |||||||| |||||   ||||||| |||||||||||| || || |||||||||||||| ||| |||||||||| |||||    
T  24373727 gtattgaattcaacaattttgtaacttttaaaaagttaaatctatcacttttcaccatttctcaatacaacatttctaagtttgtcctcttaaccaatgt 24373628  T
Q  123 ctaaagg 129  Q
    || ||||    
T  24373627 cttaagg 24373621  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 12349633 - 12349548
Alignment:
Q  36 caattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaactaatg 121  Q
    |||||||||||||||| ||||| | ||||||| |||||||||||| | |   |||||||||| ||||||| |||||||||| ||||    
T  12349633 caattttttaacttttaaaaagtcaaatctatcacttttcaccattttcatatacaacatttttaaatttgtcctcttaaccaatg 12349548  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 6061515 - 6061592
Alignment:
Q  69 acttttcaccatatcccactacaacatttctaaatttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    |||||||||| | ||||| ||||||||||||||||||  | ||||||| ||||||  || |||| | |||||||||||    
T  6061515 acttttcaccttttcccaatacaacatttctaaattttccatcttaaccaatgtcctaaagacattctttagcatttc 6061592  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 32251338 - 32251457
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttcta 100  Q
    |||||||||||||  || |||||||||||||| | |||||||||||||||| ||||| |  ||| || |||||||||||| | ||| ||||||| |||||    
T  32251338 ggaaacaaaaaatagtaggtttgtattgaattcaacaattttttaactttt-aaaagtcagatccatcacttttcaccatttaccaatacaacacttcta 32251436  T
Q  101 aatttatcctcttaactaatg 121  Q
    | ||| || ||||||| ||||    
T  32251437 agtttgtcttcttaaccaatg 32251457  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31490814 - 31490664
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattact-----tttcaccatatcccactacaacat 95  Q
    |||||| ||||||  ||||||||||||||||| | |||||||||||||||| ||||    ||||||| |||     ||||||||| ||||| |||| |||    
T  31490814 ggaaactaaaaatagtaagtttgtattgaattcaacaattttttaactttttaaaaattaaatctatcacttttcatttcaccatttcccaatacatcat 31490715  T
Q  96 ttctaaatttatcctcttaactaatgtctaaaggacactttttagcatttc 146  Q
    || ||| ||| |||||||||| ||||||  |||| |||| |||| ||||||    
T  31490714 ttttaagtttgtcctcttaaccaatgtcctaagggcactctttaacatttc 31490664  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26539097 - 26539218
Alignment:
Q  1 ggaaacaaaaaatgataagtttgtattgaatttagcaatttttt-aacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttct 99  Q
    |||||| ||||||  |||||||| |||||||| | ||||||||| || |||| ||||| | ||||||| | |||||| ||| |  || ||||| ||||||    
T  26539097 ggaaactaaaaatagtaagtttgcattgaattcaacaatttttttaatttttaaaaagtcaaatctatcaattttcatcatttttcaatacaatatttct 26539196  T
Q  100 aaatttatcctcttaactaatg 121  Q
    || ||| | |||||||||||||    
T  26539197 aagtttgttctcttaactaatg 26539218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 28014635 - 28014740
Alignment:
Q  16 taagtttgtattgaatttagcaattttttaacttttcaaaagccgaatctattacttttcaccatatcccactacaacatttctaaatttatcctcttaa 115  Q
    |||||||| |||| ||| | |||| ||||||||||| ||||| | ||   || | |||||||||| ||||| ||||| |||||||| |||| ||||||||    
T  28014635 taagtttgcattggattcaacaatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaatacaatatttctaattttaccctcttaa 28014734  T
Q  116 ctaatg 121  Q
    | ||||    
T  28014735 ccaatg 28014740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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