View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-3-1-Insertion-12 (Length: 131)
Name: NF0440-3-1-Insertion-12
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-3-1-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 5e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 5e-66
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 53007193 - 53007063
Alignment:
| Q |
1 |
tctcgtgtatgaggtgttggaaatgatttttattccaaaaggatgaattggaagcataaatctttagtttatccggaaattgttagttcccatatgaact |
100 |
Q |
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| T |
53007193 |
tctcgtgtatgaggtgttggaaatgatttttattccaaaaggatgaattggaagcataaatctttagtttatccgaaaattgttagttcccatatgaact |
53007094 |
T |
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| Q |
101 |
ccaacaatcatgaacaaaatcacaaaaatca |
131 |
Q |
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| T |
53007093 |
ccaacaatcatgaacaaaatcacaaaaatca |
53007063 |
T |
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