View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-3-1-Insertion-22 (Length: 79)

Name: NF0440-3-1-Insertion-22
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-3-1-Insertion-22
NF0440-3-1-Insertion-22
[»] chr5 (1 HSPs)
chr5 (11-79)||(223676-223744)
[»] chr4 (1 HSPs)
chr4 (11-79)||(38554874-38554942)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 223676 - 223744
Alignment:
11 ataaactttaattccttaaacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaa 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
223676 ataaactttaattccttatacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaa 223744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 38554942 - 38554874
Alignment:
11 ataaactttaattccttaaacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaa 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
38554942 ataaactttaattccttagacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaa 38554874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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