View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-3-1-Insertion-39 (Length: 150)

Name: NF0440-3-1-Insertion-39
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-3-1-Insertion-39
NF0440-3-1-Insertion-39
[»] chr4 (1 HSPs)
chr4 (7-150)||(41485135-41485278)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 5e-76; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 41485135 - 41485278
Alignment:
7 ctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccatacaatgatgatgttttagcattaccttcagagtagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41485135 ctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccatacaatgatgatgttttagcattaccttcagagtagtt 41485234  T
107 tatccaaatgtctgttcagagttgttttgttttccaaacaagta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
41485235 tatccaaatgtctgttcagagttgttttgttttccaaacaagta 41485278  T

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