View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-3-1-Insertion-5 (Length: 225)
Name: NF0440-3-1-Insertion-5
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-3-1-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 5173684 - 5173468
Alignment:
| Q |
10 |
acaattgaagttcaaaaggttcgtcatccaaa-tttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaat |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173684 |
acaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaat |
5173585 |
T |
|
| Q |
109 |
ttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtttgtaggagttcgtcaaaggccgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173584 |
ttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtttgtaggagttcgtcaaaggccgtc |
5173485 |
T |
|
| Q |
209 |
cggaagatgggtagcag |
225 |
Q |
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||||||||||||||||| |
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| T |
5173484 |
cggaagatgggtagcag |
5173468 |
T |
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