View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0478-INSERTION-6 (Length: 151)
Name: NF0478-INSERTION-6
Description: NF0478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0478-INSERTION-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 3e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 47186154 - 47186004
Alignment:
| Q |
1 |
caaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagt |
100 |
Q |
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| T |
47186154 |
caaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagt |
47186055 |
T |
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| Q |
101 |
ctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatga |
151 |
Q |
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| T |
47186054 |
ctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatga |
47186004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 47198680 - 47198543
Alignment:
| Q |
14 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
113 |
Q |
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| T |
47198680 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47198581 |
T |
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| Q |
114 |
gtctcactaggaattaaccaaccaagtggaccccatga |
151 |
Q |
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| T |
47198580 |
gtctcactaggaattaaccaaccaagtggaccccatga |
47198543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 748509 - 748656
Alignment:
| Q |
1 |
caaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagt |
100 |
Q |
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| T |
748509 |
caaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagt |
748608 |
T |
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| Q |
101 |
ctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
148 |
Q |
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| T |
748609 |
ctcgagtggaaatgtctcacttggaataagccaaccgagaggacccca |
748656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 1356896 - 1356829
Alignment:
| Q |
81 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggacccca |
148 |
Q |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggacccca |
1356829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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