View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0805-2 (Length: 387)
Name: NF0805-2
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 191 - 387
Target Start/End: Complemental strand, 36774070 - 36773872
Alignment:
| Q |
191 |
cccttcttgccttctctcattattgaatctaattcatgcttataacagaccacaaaagttttattttacttctcgttcttcctacaaggcatgcacttat |
290 |
Q |
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| T |
36774070 |
cccttcttgccttctctcgttattgaatctaattcatgcttataacagaccacaaaagttttattttacttctcgttcttcctacaaggcatgcacttat |
36773971 |
T |
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| Q |
291 |
ttggtctttggcttttcgggt--cgattatctcaatgttatgtctttctcctttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaat |
387 |
Q |
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| T |
36773970 |
ttggtctttggcttttcgggttccgattatctcaatgttatgtctttctcttttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaat |
36773872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 36774307 - 36774125
Alignment:
| Q |
9 |
tctttgcttcccaactctagtcacacgcgaagacaaggtatcaggtttgaaatttctatgcaacttattcacagcacttattagttaaactggtttatgt |
108 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36774307 |
tctttgcttcccaactctagtcacacgcgacgacaaggtatcaggtttgaaatttctatgcaacttattcacggcacttattagttaaactggtttatgt |
36774208 |
T |
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| Q |
109 |
gaagtagtatatgatacattatcttcatcttaattagttcctctagtttgatcatggaccctatttcaacttctgaacagggc |
191 |
Q |
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| T |
36774207 |
gaagtagtatatgatacattattttcatcttaattagttcctctagtttgatcatggaccctatttcaacttctgaacagggc |
36774125 |
T |
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