View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0805_high_2 (Length: 329)
Name: NF0805_high_2
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 311
Target Start/End: Original strand, 40182371 - 40182653
Alignment:
| Q |
29 |
acaattagagcttctcatcacattgtcaaattcctcccagtggctgtcattaaaagcttaaaatgtcttgtacctatggagccatattttgtagcaaaat |
128 |
Q |
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| T |
40182371 |
acaattagagcttctcatcacattgtcaaattcctcccagtggctgtcattaaaagctgaaaatgtcttgtacctatggagccatattttgtagcaaaat |
40182470 |
T |
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| Q |
129 |
tgtccagcagatagtgacaggaatataacatccccatcacactgcaaccataacaaaacaattccaacatataaccggccagacggccaatccaacaaca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40182471 |
tgtccagcagatagtgacaggaatataacatccccatcacactgcaaccataacaaaacaattccaacatataaccggccagacggccaatccaacaaca |
40182570 |
T |
|
| Q |
229 |
aagaagcatatgttataaagaatattctgttttacattctaatgtgacaaaaaacacacaaattaataattagcaacattagt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40182571 |
aagaagcatatgttataaagaatattctgttttacattctaatgtgacaaaaaacacacaaattaataattagcaacattagt |
40182653 |
T |
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