View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0805_low_1 (Length: 436)
Name: NF0805_low_1
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 22242283 - 22242621
Alignment:
| Q |
19 |
ggacatcatcaagacatgactgcataataccaaggggaccggctgctaaaacaagcctttccaaatccagcccagacatcatgacatagactcctgaaca |
118 |
Q |
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| T |
22242283 |
ggacaacatcaagacatgactgcataataccaaggggaccggctgctaaaacaagcctttccaaatccagcccagacatcatgacatagactcctgaaca |
22242382 |
T |
|
| Q |
119 |
aaaagaaaataatggtattaacaaaatattattgacacctgacaaagcaaaagtggttttttcatcagagtttacattgtcnnnnnnnnnnnnnnnnnct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
22242383 |
aaaagaaaataatggtattaacaaaatattattgacacctgacaaagcaaaagtggttttttcatcagagtttacatcgtcaaaaagcaacagaaaaact |
22242482 |
T |
|
| Q |
219 |
aattctgtgtcaatctactgattttggaaaaatttatgccactggaaaggaaattcttgtccatagtaacaaagataagaacacaagaaatgtgctc-tt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22242483 |
aattctgtgtcaatctactgattttggaaaaatttatgccactggaaaggaaattcttgtccatagtaacaaagataagaacacaagaaatgtgctcttt |
22242582 |
T |
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| Q |
318 |
tcttgannnnnnnnnnctttcaaatgtgtgtgtgtgtgt |
356 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
22242583 |
tcttgattttttttttctttcaaatgtgtgtgtgtgtgt |
22242621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 22242651 - 22242697
Alignment:
| Q |
382 |
gcagaagatgatataatgcaagagaagcatactttgtaagaataatc |
428 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22242651 |
gcagaagatgatataatgcaggagaagcatactttgtaagaataatc |
22242697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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