View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0805_low_3 (Length: 257)
Name: NF0805_low_3
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 11379589 - 11379807
Alignment:
| Q |
30 |
atttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaataa |
129 |
Q |
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| T |
11379589 |
atttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaataa |
11379688 |
T |
|
| Q |
130 |
acatctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagtac |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11379689 |
acatctgactttgaagtaagttcgcctgtacccaagaattccggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagtac |
11379788 |
T |
|
| Q |
230 |
tattgttactagaataatc |
248 |
Q |
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|||||||||||||| |||| |
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| T |
11379789 |
tattgttactagaagaatc |
11379807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 29363028 - 29362944
Alignment:
| Q |
115 |
attccaaatgaataaacatctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttg |
199 |
Q |
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|||||||| |||||||||||||| || | ||| ||||| || | | | | |||||| ||||||||||| ||||||||||||||| |
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| T |
29363028 |
attccaaaagaataaacatctgatttcggagtgagttcaccggaagcaaggaattcaggatccatgtagacaaaagttccctttg |
29362944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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