View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851-INSERTION-10 (Length: 577)
Name: NF0851-INSERTION-10
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851-INSERTION-10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 179 - 577
Target Start/End: Original strand, 49560967 - 49561360
Alignment:
| Q |
179 |
tacaagcaattacatgataagatagataggtaattatgggactagagctgtgacttgtgataaggggcattcaattttgttacagcaatagtctaaggat |
278 |
Q |
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| T |
49560967 |
tacaagcaattacatgataagatagataggtaattatgggactagagctgtgacttgtgataaggggcattcaattttgttacagcaatagtctaaggat |
49561066 |
T |
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| Q |
279 |
cttgacaattactcaaacacaaattaacaatcaatagtcttaactcttaacttcttcatgaacaatacagctcaatttactaggtgtggttcctgaaggt |
378 |
Q |
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| T |
49561067 |
cttgacaattactcaaacacaaattaacaatcaatagtctt-------aacttcttcatgaacaatacagctcaatttactaggtgtggttcctgaaggt |
49561159 |
T |
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| Q |
379 |
actttgacatatctgcttttctcaatactttaaatttgtaataatacgtgccta-caatataaagaaagccttacttatatacaaaaaataa--gctttt |
475 |
Q |
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| T |
49561160 |
actttgacatatctgcttttctcaatactttaaatttgtaataatatgtgcctaccaatataaagaaagccttacttatatacaaaaaataaagcctttt |
49561259 |
T |
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| Q |
476 |
gtt-cacgatggacgaagcggctatacaagtcaaaccagatcataatgtccctatcatgaataaagtctaagggatagtgataggaaccaaaatatgaaa |
574 |
Q |
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| T |
49561260 |
gttccacgatggacgacacggctatacaagtcaaaccagatcataatgt-cctatcatgaataaagtctaa-ggatagtgataggaaccaaaatatgaaa |
49561357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 49560846 - 49560950
Alignment:
| Q |
8 |
tggtgtacccaaatccgtcatcaatagatcaatcctagagggtttggctttacatctagctaattagcactgaacaaggagaatctcaatgcttttatta |
107 |
Q |
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| T |
49560846 |
tggtgtacccaaatccgtcatcaatagatcaatcctagagggtttggctttacaactagctaattagcactgaacaaggagaatctcaatgcttttatta |
49560945 |
T |
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| Q |
108 |
atgaa |
112 |
Q |
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||||| |
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| T |
49560946 |
atgaa |
49560950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 49568975 - 49569226
Alignment:
| Q |
9 |
ggtgtacccaaatccgtcatcaatagatcaatcctagagggtttggctttacatctagctaattag-----cactgaacaaggagaatctcaatgctttt |
103 |
Q |
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| T |
49568975 |
ggtgtacccaaatccctcaccaatagatcaatcctagtggctttggctttacatctagctagctagtttgacactgaacaaggataatctcaacccattt |
49569074 |
T |
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| Q |
104 |
attaatgaataggggggaaaaatgagatgtgataagtcaaggagatctcattacctcttnnnnnnnng----atctcattacaagcaattacatgataag |
199 |
Q |
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| T |
49569075 |
attaatgaataagggg--aaaatgagatgtgataagtcaaggagatctcattacctcttacaaaaaagggacgtctcattacaagcaattacatgataag |
49569172 |
T |
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| Q |
200 |
atagataggtaattatgggactagagctgtgacttgtgataaggggcattcaattttgttacagcaata |
268 |
Q |
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| T |
49569173 |
atagatag---------------gagctgtgacttgtgataaggggcattcaattttgttccagcaata |
49569226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 547
Target Start/End: Complemental strand, 49907623 - 49907580
Alignment:
| Q |
503 |
agtcaaaccagatcataatgtccctatcatgaataaagtctaagg |
547 |
Q |
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| T |
49907623 |
agtcaaaccagatcataatgt-cctatcatgaattaagtttaagg |
49907580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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