View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851-INSERTION-2 (Length: 465)
Name: NF0851-INSERTION-2
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851-INSERTION-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Complemental strand, 11034524 - 11034077
Alignment:
| Q |
8 |
gaactttcttggctcaacagtttttgtaaattagatgtttcatatgcgtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034524 |
gaactttcttggctcaacagtttttgtaaattagatgtttcgtatgcgtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtata |
11034425 |
T |
|
| Q |
108 |
tatgcaattctgcgctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccacacccatttgttagagt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034424 |
tatgcaattctgctctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccacacccatttgttagagt |
11034325 |
T |
|
| Q |
208 |
gagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggcttggatagttgcacgtttatcgagtc |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11034324 |
gagtgctactaattaacactcaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggcttggatagttgcatgtttatcgagtc |
11034225 |
T |
|
| Q |
308 |
gcataggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactatnnnnnnnnccttgttctgttgttagtatgatgt |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11034224 |
gcacaggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactataaaaaaaa-cttgttctgttgttagtatgatgt |
11034126 |
T |
|
| Q |
408 |
cttttcttctaaaaaacttgtcaatagtaagtaatattgggcaatatttttcg |
460 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
11034125 |
cttttcttctaaaaaacttgtaaat----agtaatattgggcaatatttttcg |
11034077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 55 - 302
Target Start/End: Complemental strand, 11009085 - 11008834
Alignment:
| Q |
55 |
gtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtatatat--gcaattctgcgctttagatactctatttttt-caagttggtt |
151 |
Q |
| |
|
|||||| | |||||||||| |||||||| |||||||||| |||||||||||||||| ||| || |||| |||| |||||||||||||| ||| || | | |
|
|
| T |
11009085 |
gtatgcagtgctcgatcaatataaccagcctcactgtaaatatggttggtatatatatgcagttgtgcgatttatatactctatttttttcaatttcgat |
11008986 |
T |
|
| Q |
152 |
gcttaatttt-cttttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgt |
250 |
Q |
| |
|
|||||||||| || ||||||||||| | | ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||| ||| |
|
|
| T |
11008985 |
gcttaatttttctattatttacaatcgcgtggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgt |
11008886 |
T |
|
| Q |
251 |
atgtccttgcagcttactggaataatgtggcttggatagttgcacgtttatc |
302 |
Q |
| |
|
|| ||||||| |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
11008885 |
ttgctcttgcagattactggaataacgcggcttggatagttgcacgtttatc |
11008834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 10921657 - 10921628
Alignment:
| Q |
8 |
gaactttcttggctcaacagtttttgtaaa |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10921657 |
gaactttcttggctcaacagtttttgtaaa |
10921628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15989 times since January 2019
Visitors: 3757