View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_high_2 (Length: 815)
Name: NF0851_high_2
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 1 - 804
Target Start/End: Original strand, 36676365 - 36677162
Alignment:
| Q |
1 |
gttatgtaagtagtaagtagtaagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattcatctgctttcttctatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676365 |
gttatgtaagtagtaagtagtaagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattcatctgctttcttctatta |
36676464 |
T |
|
| Q |
101 |
cgctcaacagcaatgtgagtcattctctgattctcaatttcttctttgtttttcctgcttctagctcttcgccttttcggacgaataactgtgttcacag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36676465 |
cgctcaacagcaatgtgagtcattctctgattctcaatttcttctttgtttttcctgcttctagctcttcgcctttttggacgaataactgtgttcacag |
36676564 |
T |
|
| Q |
201 |
aaggtgaagcatgaaagttttgagtgttattagtattactacttggatcagtagtggtttcttgaacttcattcaactggggtggtgaaaaagtggaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36676565 |
aaggtgaagcatgaaagttttgagtgttattagtattactacttgggtcagtagtggtttcttgaacttcattcaaatggggtggtgaaaaagtggaact |
36676664 |
T |
|
| Q |
301 |
attgttgttattccaatctacataaggaggacaattattttctgtttggttttctacaaaactgaaagatctatgttcttgttcttgttcttgttctttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36676665 |
attgttgttattccaatctacataaggaggacaattattttctgtttggttttctacaaaactgaaagatctatgtt------cttgttcttgttctttt |
36676758 |
T |
|
| Q |
401 |
gcaactagagtgttgaagttgaagttgtaaaaatctttgattccataactaaaaggatcttgtgtttgtggataaaccactgcttctagtgccatgtctt |
500 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676759 |
gcaacaagagtgttgaagttgaagttgtaaaaatctttgattccataactaaaaggatcttgtgtttgtggataaaccactgcttctagtgccatgtctt |
36676858 |
T |
|
| Q |
501 |
tcactctatctctttcctcttcaggtaaacacataacaatcaatcaattttatttctatccttcgagggaaagtggaagatgatgatgaataaaatgtta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676859 |
tcactctatctctttcctcttcaggtaaacacataacaatcaatcaattttatttctatccttcgagggaaagtggaagatgatgatgaataaaatgtta |
36676958 |
T |
|
| Q |
601 |
agtatttttgggcttataaaggccttgttcaaggatacaacaatggacagtgatttttgcacgtgaaattccattaaatgtatatagatcattaacttta |
700 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676959 |
agtatttttgggcttataaaggccttgttcaaggatataacaatggacagtgatttttgcacgtgaaattccattaaatgtatatagatcattaacttta |
36677058 |
T |
|
| Q |
701 |
cacggttaattgaatgatggttgttagataaaatcaaagcaattttagtcaatatcactctattattttattttagcatatgcggtcctttgagtttgat |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36677059 |
cacggttaattgaatgatggttgttagataaaatcaaagcaattttagtcaatatcactctattattttattttagcatatgcggtcctttaagtttgat |
36677158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 46921939 - 46921817
Alignment:
| Q |
22 |
aagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattcatctgctttcttctattacgctcaacagcaatgtgagtc |
121 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||| | ||||| ||| |||||||||||||| |||||||| || || || || ||||||||||||||| |
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|
| T |
46921939 |
aagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtc |
46921840 |
T |
|
| Q |
122 |
attctctgattctcaatttcttc |
144 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
46921839 |
attctctgattctcaatttcttc |
46921817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 27300928 - 27301008
Alignment:
| Q |
74 |
tactcattcatctgctttcttctattacgctcaacagcaatgtgagtcattctctgattctcaatttcttctttgtttttc |
154 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||| |||| ||||| || ||||||||| |
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| T |
27300928 |
tactcattcatctgttttcttcgattgcgctcaactgcaatgtgagtcatcctctggctctcgatttcctccttgtttttc |
27301008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 8873343 - 8873385
Alignment:
| Q |
95 |
ctattacgctcaacagcaatgtgagtcattctctgattctcaa |
137 |
Q |
| |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
8873343 |
ctattacgttcaacagcaatgtgtgtcattctttgattctcaa |
8873385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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