View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_high_8 (Length: 474)
Name: NF0851_high_8
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 11055525 - 11055891
Alignment:
| Q |
30 |
agagtgaatattttagaatcactccgatcatgattttctaaaaactacatttcgtaaattctacaaaatcaggatgaatcactgcgattctgatatactc |
129 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| || ||||||||||||||| |
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| T |
11055525 |
agagtggatatttcagaatcactccgatcatgattttctaaaaattacatttcgtagattctgcaaaatcaggatgaatcattgtgattctgatatactc |
11055624 |
T |
|
| Q |
130 |
atcctaata-gtttatacttattttggttatttgcagatttcttggtacaatttcaggaagcaaatccatgatttacccactcatacaagaaaagataaa |
228 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |
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| T |
11055625 |
atcctaataagcttatacttattttggttatttgcagatttcttggtacaatttcaggaagcaaatcgacgatttacccactcataaaagaaaagataaa |
11055724 |
T |
|
| Q |
229 |
aacattgcaagaagaaacgaaattgagagacagcacaccaacgttgaattnnnnnnngaagacaagtgaagaagatgagaaaaaagtgaatttgttcacg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11055725 |
aacattgcaagaagaaacgaaattgagagacagcacaccaacgttgaattaaaaaaagaagacaagtgaagaagatgagaaaaaagtgaatttgttcacg |
11055824 |
T |
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| Q |
329 |
agttgacacaagcaagcatatccacttgttgtactaaaccctctcattcataactcataccccacca |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11055825 |
agttgacacaagcaagcatatccacttgttgtactaaaccctctcattcataactcataccccacca |
11055891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 11055926 - 11055977
Alignment:
| Q |
418 |
aagttgaaatgtcaacaacagcagcaaccttaaagtcttctcctttgctact |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11055926 |
aagttgaaatgtcaacaacagcagcaaccttaaagtcttctccttttctact |
11055977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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