View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_14 (Length: 435)
Name: NF0851_low_14
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 9350843 - 9350450
Alignment:
| Q |
30 |
gttaggctccctcttagagagctcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatagaacctaactttgtatcatca |
129 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9350843 |
gttagcctccctcttagagagctcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatagaacctaactttgtatcatca |
9350744 |
T |
|
| Q |
130 |
cgtgcaccgtagatgaaagggtctaaccacaccttttgaatccaagcagaaaattactctttcgaacaccaactcattcacccaatccatgtctgctagc |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9350743 |
cgtgcaccgtagatgaaagggtctaaccacaccttttgaatccaagcagaaaatcactctttcgaacaccaactcattcacccaatccatgtctgctagc |
9350644 |
T |
|
| Q |
230 |
agccctaacacttcacaactgttataatcagctgtaaccatgttttcgctaacataaacataccgaatttatatctcaagcacattcatatacccactct |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9350643 |
agccctaacacttcacaactgtcataatcagctgtaaccatgttttcgctaacataaacataccgaatttatatctcaagcacattcatatacccactct |
9350544 |
T |
|
| Q |
330 |
attatgatactccaagaacgaaacatcgacgttacacacacttgataatggtgtaagggggacactcccatttaaaactgttctggctggtctg |
423 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9350543 |
attatgatactccaagaacgaaacatcgacgttacacacacttgataatggtgtaagggggacactcccatttaaaactgttctggctggtctg |
9350450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 31 - 422
Target Start/End: Complemental strand, 9375687 - 9375288
Alignment:
| Q |
31 |
ttaggctccctcttagagagctcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatagaacctaactttgtatcatcac |
130 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||| |
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| T |
9375687 |
ttagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaaaatacaacctaactctgtatcgtcac |
9375588 |
T |
|
| Q |
131 |
gtgcaccgtagatgaaagggtctaaccacaccttttgaatccaagcagaaaattactctttcgaacaccaactcattcacccaatccatgtctgctagca |
230 |
Q |
| |
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| |||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9375587 |
gcgcaccggagatgaaagaatct-accacaccttttgaatccaagcagaaaatcactctttcgaacaccaactcattcacccaatccatgtcttctagca |
9375489 |
T |
|
| Q |
231 |
gccctaacacttc-------acaactgttataatcagctgtaaccatg--ttttcgctaacataaacataccgaatttatatctcaagcacattcatata |
321 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
9375488 |
gccctaacacttcttcaattgcaactgtcatgatcagctgtaaccatgttttttcgctaacataaacataccgaatttatctctcaagtacattcatatc |
9375389 |
T |
|
| Q |
322 |
cccactctattatgatactccaagaacgaaacatcgacgttacacacacttgataatggtgtaagggggacactcccatttaaaactgttctggctggtc |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||| || |||||||||||| || ||||||||| |
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| T |
9375388 |
tccactctattatgatactccaagaacgaaacattgacggtacacacacttgataaaggtgtaaggcggacgctgccatttaaaacttttgtggctggtc |
9375289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 6470852 - 6470802
Alignment:
| Q |
51 |
ctcgacattagagttgttacaaatatcagataaactaactctacatctagc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | |||||||| ||||| |
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|
| T |
6470852 |
ctcgacataagagttgttacaaatatcagataaatttactctacacctagc |
6470802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 6750378 - 6750428
Alignment:
| Q |
51 |
ctcgacattagagttgttacaaatatcagataaactaactctacatctagc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
6750378 |
ctcgacataagagttgttacaaatatcagataaatttactctacacctagc |
6750428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 41289862 - 41289911
Alignment:
| Q |
52 |
tcgacattagagttgttacaaatatcagataaactaactctacatctagc |
101 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
41289862 |
tcgacataagagttgttacgaatatcagataaattaactctacacctagc |
41289911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 6955096 - 6955160
Alignment:
| Q |
31 |
ttaggctccctcttagagagctcgacattagagttgttacaaatatcagataaactaactctaca |
95 |
Q |
| |
|
|||| ||| |||||||| | |||||||| ||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
6955096 |
ttagtctctctcttagaaaactcgacataagagttgttacaaatattagataaatttactctaca |
6955160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 27998278 - 27998202
Alignment:
| Q |
52 |
tcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatagaacctaactttgtatcatc |
128 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| | |||||||||||| ||| |||| | ||||| ||||||||| |
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|
| T |
27998278 |
tcgacataaaagttgttacaaatatcagataaatcatctctacatctagttaaagtagagcttaactctgtatcatc |
27998202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 28055580 - 28055504
Alignment:
| Q |
52 |
tcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatagaacctaactttgtatcatc |
128 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| | |||||||||||| ||| |||| | ||||| ||||||||| |
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|
| T |
28055580 |
tcgacataaaagttgttacaaatatcagataaatcatctctacatctagttaaagtagagcttaactctgtatcatc |
28055504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 8746580 - 8746630
Alignment:
| Q |
51 |
ctcgacattagagttgttacaaatatcagataaactaactctacatctagc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| | |||||||| ||||| |
|
|
| T |
8746580 |
ctcgacataagagttgttacaaatattagataaatttactctacacctagc |
8746630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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