View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_low_17 (Length: 385)

Name: NF0851_low_17
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_low_17
NF0851_low_17
[»] chr5 (10 HSPs)
chr5 (240-381)||(12812667-12812808)
chr5 (240-381)||(12749575-12749716)
chr5 (240-385)||(12812594-12812739)
chr5 (244-385)||(12812732-12812870)
chr5 (244-385)||(12749640-12749778)
chr5 (250-338)||(12812572-12812660)
chr5 (240-385)||(12749502-12749647)
chr5 (262-338)||(12749480-12749556)
chr5 (256-347)||(12749399-12749487)
chr5 (256-347)||(12812491-12812579)
[»] chr4 (1 HSPs)
chr4 (1-64)||(1869511-1869574)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 12812808 - 12812667
Alignment:
Q  240 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812808 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct 12812709  T
Q  340 tcaccacctccgtagccagaagcaccatgctctcccccacca 381  Q
    |  |||||||||||||||||  | ||||||||||||||||||    
T  12812708 ttgccacctccgtagccagactcgccatgctctcccccacca 12812667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 12749716 - 12749575
Alignment:
Q  240 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  12749716 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctaccccaccaccataacctcctccagctccacctcct 12749617  T
Q  340 tcaccacctccgtagccagaagcaccatgctctcccccacca 381  Q
    |  |||||||||||||||||  | ||||||||||||||||||    
T  12749616 ttgccacctccgtagccagactcgccatgctctcccccacca 12749575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 12812739 - 12812594
Alignment:
Q  240 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct 339  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||  | |||||||||||||||||| | || ||||||||||| |||||||||    
T  12812739 accaccatagcctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctcct 12812640  T
Q  340 tcaccacctccgtagccagaagcaccatgctctcccccaccaccat 385  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  12812639 tcaccacctccatagccagaatcaccatgctctcccccaccaccat 12812594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 12812870 - 12812732
Alignment:
Q  244 ccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcac 343  Q
    ||||| ||||| ||||| ||||| ||||||||||| ||||| |||  |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812870 ccataacctccgccagcaccaccaccttcaccaccaccgtaaccaata---ccatgctctcccccaccaccatagcctcctccagctccacctccttcac 12812774  T
Q  344 cacctccgtagccagaagcaccatgctctcccccaccaccat 385  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12812773 cacctccgtagccagaagcaccatgctctcccccaccaccat 12812732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 12749778 - 12749640
Alignment:
Q  244 ccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcac 343  Q
    ||||| ||||| ||||| ||||| ||||||||||| ||||| |||  |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749778 ccataacctccgccagcaccaccaccttcaccaccaccgtaaccaata---ccatgctctcccccaccaccatagcctcctccagctccacctccttcac 12749682  T
Q  344 cacctccgtagccagaagcaccatgctctcccccaccaccat 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  12749681 cacctccgtagccagaagcaccatgctctaccccaccaccat 12749640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 12812660 - 12812572
Alignment:
Q  250 cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcc 338  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  12812660 cctcctccagccccacctccttcaccacctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc 12812572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 12749647 - 12749502
Alignment:
Q  240 accaccatagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcct 339  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||  | |||||||||||||||||| | |    |  |    | |||||||||    
T  12749647 accaccataacctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcttttttttttttttccccacctcct 12749548  T
Q  340 tcaccacctccgtagccagaagcaccatgctctcccccaccaccat 385  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  12749547 tcaccgcctccatagccagaatcaccatgctctcccccaccaccat 12749502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 12749556 - 12749480
Alignment:
Q  262 ccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcc 338  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  12749556 ccacctccttcaccgcctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc 12749480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 12749487 - 12749399
Alignment:
Q  256 ccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacc 347  Q
    |||||||||||||||| |||||| || || |||    | ||||||||||| |||  |||||| ||||| |||||||||||||||| ||||||    
T  12749487 ccagctccacctccttgaccaccaccataaccac---ctccatgctctccaccattaccataacctccaccagctccacctccttgaccacc 12749399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 12812579 - 12812491
Alignment:
Q  256 ccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacc 347  Q
    |||||||||||||||| |||||| || || |||    | ||||||||||| |||  |||||| ||||| |||||||||||||||| ||||||    
T  12812579 ccagctccacctccttgaccaccaccataaccac---ctccatgctctccaccattaccataacctccaccagctccacctccttgaccacc 12812491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1869574 - 1869511
Alignment:
Q  1 catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatttgcgg 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1869574 catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatatgcgg 1869511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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