View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851_low_20 (Length: 365)
Name: NF0851_low_20
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 6515293 - 6515520
Alignment:
| Q |
8 |
ccaagaatatatattttaatactagagtattgcttaagttagagaattgaagaggtaagttttcatgaga----gttaacaaatgttgtgaaacttacct |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6515293 |
ccaataatatatattttaatactagagtattgcttaagttagagaattgaagaggtaagttttcatgagaataagttaacaaatgttgtgaaacttacct |
6515392 |
T |
|
| Q |
104 |
tcatgaaataagttagagaataaaagaaatgttttgcttgtattttagtgctgtataaatagttgtataaaagctttgtttgaccgacgacataatcatg |
203 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6515393 |
tcatgagataagttagagaataaaagaaatgttttgcttgtattttagtgctgtataaatagttgtataaaagctttgtttgaccgacgacataatcatg |
6515492 |
T |
|
| Q |
204 |
cttcctctttctcaaaattaaattagta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6515493 |
cttcctctttctcaaaattaaattagta |
6515520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7811 times since January 2019
Visitors: 7737