View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_low_23 (Length: 361)

Name: NF0851_low_23
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_low_23
NF0851_low_23
[»] chr1 (1 HSPs)
chr1 (15-346)||(46753810-46754129)
[»] chr2 (2 HSPs)
chr2 (79-339)||(1680587-1680847)
chr2 (130-205)||(26159664-26159739)
[»] chr3 (1 HSPs)
chr3 (217-346)||(44659467-44659597)
[»] chr6 (1 HSPs)
chr6 (61-205)||(12250863-12251007)
[»] chr4 (3 HSPs)
chr4 (67-205)||(26698043-26698181)
chr4 (138-205)||(55416932-55416999)
chr4 (152-205)||(48825355-48825408)
[»] chr8 (1 HSPs)
chr8 (59-206)||(30541846-30541994)
[»] chr7 (1 HSPs)
chr7 (61-97)||(23690603-23690639)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 46753810 - 46754129
Alignment:
Q  15 ataattctttacatttttgttgttgtttttatctgtcaattacatgtttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatc 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  46753810 ataattctttacatatttgttgttgtttttatctgtcaattacatgtt------------aacactagagtttttcaacaaaagggggactccattaatc 46753897  T
Q  115 atctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaacacactctc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46753898 atctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaacacactctc 46753997  T
Q  215 atatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcattttggctgtatcactaagcttttgttcttgttgtccatat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  46753998 atatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctacattttggctatatcactaagtttttgttcttgttgtccatat 46754097  T
Q  315 gtaactgatatttttattctctagttcatctc 346  Q
    |||||||||||||||||||| |||||| ||||    
T  46754098 gtaactgatatttttattctttagttcttctc 46754129  T

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Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 79 - 339
Target Start/End: Original strand, 1680587 - 1680847
Alignment:
Q  79 ctagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgc 178  Q
    ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||  | |||| ||||||||  |||||| ||||||||| ||||||||     
T  1680587 ctagagtttttcaacaaaaagggtactccattaaacaactcatagaaaaggttaaactccaatccttctagtgattgaagacaaatcatcatagttttga 1680686  T
Q  179 tttttcttaccacatgtggtggcttaacacactctcatatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcattttg 278  Q
    |||  |||||||||  |||||| ||||  ||||||||| ||| ||||||||||||||| | || | ||||||||||| |||||| ||||| ||  |||||    
T  1680687 tttcacttaccacacctggtggtttaagccactctcatgtttaggagtttttatttagtttcgatttcttttattctctttagtgtttgcatgatttttg 1680786  T
Q  279 gctgtatcactaagcttttgttcttgttgtccatatgtaactgatatttttattctctagt 339  Q
    ||| ||||| |||| ||||||||||| | | || |||  ||||||||| || |||||||||    
T  1680787 gctatatcattaagtttttgttcttggttttcagatgcgactgatattatttttctctagt 1680847  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 26159739 - 26159664
Alignment:
Q  130 ttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 205  Q
    ||||| |||||| |||||||| | ||||| |||||||||||| ||||||||||  ||| |||||||||||||||||    
T  26159739 ttaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaa 26159664  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 346
Target Start/End: Original strand, 44659467 - 44659597
Alignment:
Q  217 atttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcatttt-ggctgtatcactaagcttttgttcttgttgtccatatg 315  Q
    |||||| |||| ||||||| || |||||||||| |||| ||||| |  |||| |||||||| |||||||| |||||| ||||||||||||| |||| |||    
T  44659467 atttggaagttcttatttaacttcggtctctttaattcgttttaatggttgcatgcatttttggctgtattactaagattttgttcttgttatccagatg 44659566  T
Q  316 taactgatatttttattctctagttcatctc 346  Q
    |||||||||||||||||||||||| ||||||    
T  44659567 taactgatatttttattctctagtccatctc 44659597  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 12250863 - 12251007
Alignment:
Q  61 tttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggc 160  Q
    |||||||||||| |||  |||||||||||||||||||| || | || || | ||| ||  |||| || |||||| | |||| |||||||| |||||| ||    
T  12250863 tttggcgtgacaagaatgctagagtttttcaacaaaagaggaattcaatcattcaacttttagataaagttaagctccaatccttctagtggttgaaagc 12250962  T
Q  161 aaatcatcctagttttgctttttcttaccacatgtggtggcttaa 205  Q
    |||||||| || ||||||||||  ||| |||||||||||||||||    
T  12250963 aaatcatcataattttgcttttaattatcacatgtggtggcttaa 12251007  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 26698043 - 26698181
Alignment:
Q  67 gtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatca 166  Q
    ||||||||||  |||||||||||||||||||||   | || || |  || ||| |||| ||  ||||| |||||| ||||| || ||||||| |||||||    
T  26698043 gtgacaggaatgctagagtttttcaacaaaaggaaaattcaatcatccaactcatagataaaattaagcttcaatccttctggtggttgaagccaaatca 26698142  T
Q  167 tcctagttttgctttttcttaccacatgtggtggcttaa 205  Q
    ||||| ||||||||||  ||| |||||||||||||||||    
T  26698143 tcctaattttgcttttaattatcacatgtggtggcttaa 26698181  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 55416932 - 55416999
Alignment:
Q  138 caattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 205  Q
    |||||||||| || |||||||||||||||||||| ||||||||||  ||||||||  |||||||||||    
T  55416932 caattcttctggtggttgaaggcaaatcatcctaattttgcttttaattaccacacatggtggcttaa 55416999  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 48825408 - 48825355
Alignment:
Q  152 gttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 205  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||| |||||||||    
T  48825408 gttgaaggcaaatcatcctaattttgtttttaattaccacatgtcgtggcttaa 48825355  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 30541846 - 30541994
Alignment:
Q  59 tgtttggcgtgacaggaacactagagtttttc-aacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaa 157  Q
    |||||||| ||||| |||  |||||||||||  |||||||||| ||||| ||| |||| ||  |||  ||  ||||| | |||| ||||| || ||||||    
T  30541846 tgtttggcatgacaagaaggctagagtttttataacaaaagggagactctattcatcaacttatagggaaaattaagctccaatccttcttgtggttgaa 30541945  T
Q  158 ggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaac 206  Q
      |||||||||||| ||||||||||  ||| || ||| |||||||||||    
T  30541946 aacaaatcatcctaattttgcttttaattatcatatgcggtggcttaac 30541994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 23690639 - 23690603
Alignment:
Q  61 tttggcgtgacaggaacactagagtttttcaacaaaa 97  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  23690639 tttggcgtgataggaatactagagtttttcaacaaaa 23690603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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