View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_24 (Length: 360)
Name: NF0851_low_24
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 8418855 - 8418502
Alignment:
| Q |
10 |
tcataggcatgaatatttctattactttgatttgttcgcagannnnnnnn---agcgatgttacatccatgtttatttctgatatactatttcaatttga |
106 |
Q |
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| T |
8418855 |
tcataggcatgaatatttctattactttgatttgttcgcagatttttttttttagggatgttacatccatgtttatttatgatatactatttcaatttga |
8418756 |
T |
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| Q |
107 |
atgaataacattacttttataataaaagaaaaattgactcctctattgtttaataaataaaaggaaaatgattcttagacatccgaactccaatctataa |
206 |
Q |
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| T |
8418755 |
atgaataacattacttttataataaaagaaaaattgactcctctattgtttaataaataaaaggaaaatgattcttagacatccgaacttcaatctataa |
8418656 |
T |
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| Q |
207 |
gagaaagaagtgaagagactaatgtgataattttgataaggagaaatgctagttctcccgaattatttggtcaagatagcatcacgatgtgagaaagtaa |
306 |
Q |
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| T |
8418655 |
gagaaagaagtaaagagactaatgtgataattttgataaggagaaatgctagttctcccgaattgtttggtcacgataaaatcactatgtgagaaagtaa |
8418556 |
T |
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| Q |
307 |
ttgctgcaataaccccttttagtttttcccgcccatgttttcctagaaattgcc |
360 |
Q |
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| T |
8418555 |
ttgctgcaataaccccttttagtttttcccgcccatgttttcctagaaattgcc |
8418502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 38291210 - 38291094
Alignment:
| Q |
247 |
gagaaatgctagttctcccgaattatttggtcaa----gatagcatcacgatgtgagaaagtaattgctgcaataacccctttta-gtttttcccgccca |
341 |
Q |
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||||||||||||| ||||| |||| |||| | || |||||||||||||||||||||||||| || |||||||||||||| ||||| || |||| |
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| T |
38291210 |
gagaaatgctagtcctccctaattgtttgcttaattaggatagcatcacgatgtgagaaagtaactgaaataataaccccttttattttttttccaccca |
38291111 |
T |
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| Q |
342 |
tgttttcctagaaattg |
358 |
Q |
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| T |
38291110 |
tgttttcctagagattg |
38291094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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