View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_26 (Length: 343)
Name: NF0851_low_26
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 18587787 - 18587992
Alignment:
| Q |
1 |
attcaaaatgataaacaaatactactataggtacattggaattcaatggaatacaatctgaaagaaaacacaatatgaacacaaacagacacaaataata |
100 |
Q |
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| T |
18587787 |
attcaaaatgataaacaaatacaactgcaggtacattggaattcaatggaatacaatctgaaagaaaacacaagatgaacacacacatacacaaataata |
18587886 |
T |
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| Q |
101 |
accaggaaaaatgagttgaataatcatatgcaaacaatatcaaattaagattttttaacattaggttcaagtcctaatccctttcttgttttcccaacaa |
200 |
Q |
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| T |
18587887 |
accaggaaaaatgagttgaataatcatatgcacacaatatcaaattaagattttttaacattaggttcaagtcctaatccctttcttgttttcccaacaa |
18587986 |
T |
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| Q |
201 |
acaaat |
206 |
Q |
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|||||| |
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| T |
18587987 |
acaaat |
18587992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 52592934 - 52592966
Alignment:
| Q |
311 |
taatggattgttccctgtttggttatcatttat |
343 |
Q |
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| T |
52592934 |
taatggattgttccctgtttggttatcatttat |
52592966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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