View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851_low_27 (Length: 331)
Name: NF0851_low_27
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 33721869 - 33721672
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721869 |
tccaacaatggctcagataacaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
33721770 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721769 |
agaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
33721672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 29867980 - 29868177
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29867980 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcacc |
29868079 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
29868080 |
agaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaattt |
29868177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 626504 - 626701
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
626504 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctattgtctcagaagaaatcttcacc |
626603 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
626604 |
agaattatgatcatcaaatcagcatttgaaatatggaatatcttcaaaattgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
626701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 20786369 - 20786172
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20786369 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcacc |
20786270 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
20786269 |
agaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaattt |
20786172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 29469692 - 29469889
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29469692 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgttgtctcagaagaaatcttcacc |
29469791 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
29469792 |
agaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaattt |
29469889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 19965446 - 19965643
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19965446 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcacc |
19965545 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
19965546 |
agaattatgaccatcaaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaattt |
19965643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 21027550 - 21027353
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21027550 |
tccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcacc |
21027451 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
21027450 |
agaattatgaccatcaaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaattt |
21027353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 6367938 - 6367811
Alignment:
| Q |
95 |
tttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaa |
194 |
Q |
| |
|
||||||| || ||||||||||||||| |||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6367938 |
tttgctgatgactcagaagaaatcttaaccaaaattatgaccatcaaaccagcatttgaaatatgaaatttcctcaaaactgaatacgaaggagatgaaa |
6367839 |
T |
|
| Q |
195 |
gaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
|||||||||| |||||||| |||||||| |
|
|
| T |
6367838 |
gaattaggggaatgcaagcgcttaattt |
6367811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 28699083 - 28698886
Alignment:
| Q |
25 |
tccaacaatatctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
124 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699083 |
tccaacaatggctcagataaataatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcacc |
28698984 |
T |
|
| Q |
125 |
agaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
222 |
Q |
| |
|
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28698983 |
ataattataaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaaacacttaattt |
28698886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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