View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_low_29 (Length: 317)

Name: NF0851_low_29
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_low_29
NF0851_low_29
[»] chr7 (12 HSPs)
chr7 (2-302)||(20338292-20338592)
chr7 (5-219)||(20141303-20141520)
chr7 (5-302)||(20133719-20134018)
chr7 (5-256)||(20126586-20126840)
chr7 (3-76)||(22062999-22063072)
chr7 (3-68)||(22069468-22069533)
chr7 (3-67)||(6865437-6865501)
chr7 (33-302)||(20374905-20375177)
chr7 (4-77)||(20351462-20351535)
chr7 (4-68)||(22080214-22080278)
chr7 (168-205)||(6865299-6865336)
chr7 (168-216)||(22080390-22080438)
[»] chr1 (1 HSPs)
chr1 (4-67)||(15960577-15960640)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 20338292 - 20338592
Alignment:
Q  2 atccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacagaggacagcctctatgtcgtt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20338292 atccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccacaaacttacagaggacagcctctatgtcgtt 20338391  T
Q  102 ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20338392 ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccacaaggaaaa 20338491  T
Q  202 tatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgta 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20338492 tatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgta 20338591  T
Q  302 t 302  Q
    |    
T  20338592 t 20338592  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 20141520 - 20141303
Alignment:
Q  5 cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt 101  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||| |||||||||||| ||||| ||||| ||||   || | | |||| ||| |||    
T  20141520 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaacttgcagacaagggctgtctctttgttgtt 20141421  T
Q  102 ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa 201  Q
    ||||||| |||||||||||| || ||||   |||||||||||||| || ||| |||||||||||| | |||||||||||||||||| ||||  |||||||    
T  20141420 ggttcctgcaatggattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaaa 20141321  T
Q  202 tatctgcaaaattagggt 219  Q
    | ||| ||||||||||||    
T  20141320 tgtctccaaaattagggt 20141303  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 20134018 - 20133719
Alignment:
Q  5 cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt 101  Q
    |||||||||||||||||||||| |||| ||||||||||| | | ||||||||||||||||| ||||| |||||||  |   |||| | |  ||||| |||    
T  20134018 cttcactgtttttcgtttgctccagaaccctccaatcat-accaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgtt 20133920  T
Q  102 ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa 201  Q
    ||||| | ||||||||||||||||||||   |||| ||||||| | | |||| ||||||||| ||||  ||||| || |||||||| ||||  |||||||    
T  20133919 ggttcatgcaatggattactctgcttgttctgtcaatttttcaactccaattttaatagtgtaacatttcttcgcttctggaacccagccacgaggaaaa 20133820  T
Q  202 tatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgta 301  Q
    ||||  ||||||||||||  ||| |||| || | |||||  |||||||||||||| | | ||||||||| ||| ||| || ||||||| ||||| |||||    
T  20133819 tatcaccaaaattagggtattctcttcataaagacctatggttctatcctaatttgaagtttggctatgttaattcaaccgacacttacaaggtcgtgta 20133720  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 20126840 - 20126586
Alignment:
Q  5 cttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttacaga---ggacagcctctatgtcgtt 101  Q
    |||||||||||||| | | ||| |||| |||||| ||||| || |||||||| | ||||| ||| || ||||| || |   |||| |||| | ||| |||    
T  20126840 cttcactgtttttcatctactccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgcaaacaaggactgcctgtttgttgtt 20126741  T
Q  102 ggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaa 201  Q
    ||||||| |||||||||||||||||||| |||| || |||||||| | |||| ||||||||| || ||||||||||||||||| || |||| | ||  ||    
T  20126740 ggttcctgcaatggattactctgcttgtttggttaggttttcacctccaattttaatagtgttacgtggcttcgtttttggaatccagccacatgggcaa 20126641  T
Q  202 tatctgcaaaattagggttctctattcacaacggcctatatttctatcctaattt 256  Q
    |||||| ||||||||||| |||| | || || |  ||||||||||||||||||||    
T  20126640 tatctgaaaaattagggtactctctccataatgagctatatttctatcctaattt 20126586  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 22062999 - 22063072
Alignment:
Q  3 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaact 76  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||||    
T  22062999 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaact 22063072  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 22069468 - 22069533
Alignment:
Q  3 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 68  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  22069468 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac 22069533  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 6865501 - 6865437
Alignment:
Q  3 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcctta 67  Q
    |||||||||||| |||||||||| ||| | ||||||||||||||| ||||||| | |||||||||    
T  6865501 tccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatcctta 6865437  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 20375177 - 20374905
Alignment:
Q  33 cctccaatcattatcgatcttccagaagatccttaccataaactt----acagaggacagcctctatgtcgttggttcctacaatggattactctgcttg 128  Q
    |||||||||||| || |||||||||||||||||||| || |||||    ||| |  || ||||| |  | ||||| || | |||||||||||||||||||    
T  20375177 cctccaatcattttcaatcttccagaagatccttactatcaacttgatgaca-aacacggcctcgacatagttggctcttgcaatggattactctgcttg 20375079  T
Q  129 tatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggttctctattc 228  Q
    | ||| || | ||||||| ||||||   | | || ||| ||| | || ||||||||||| ||||  |||| |||||||| ||||||||| |   ||||||    
T  20375078 tttggccattctttcaccgctaatttcgacattgagacgtggatacgcttttggaacccagccacgaggacaatatctgaaaaattaggatatactattc 20374979  T
Q  229 acaacggcctatatttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgtat 302  Q
    | |||  |||| ||||| ||| |||||| ||| || | |||| ||| ||| || ||||||||||||||| ||||    
T  20374978 ataacaacctacatttccatcataatttgacgttttgttatgttaactcaaccgacacttataaggtggcgtat 20374905  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 20351462 - 20351535
Alignment:
Q  4 ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaactt 77  Q
    ||||||| ||||||||||||||  |  ||||||||| |||| || ||||||||||||||||| || ||||||||    
T  20351462 ccttcacagtttttcgtttgctacaagatcctccaagcattttcaatcttccagaagatcctcactataaactt 20351535  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 22080214 - 22080278
Alignment:
Q  4 ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 68  Q
    ||||||| ||||| |||||||||||||| ||||| ||||||||| ||||| || || ||||||||    
T  22080214 ccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaaatatccttac 22080278  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 6865336 - 6865299
Alignment:
Q  168 tggcttcgtttttggaaccctgccataaggaaaatatc 205  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  6865336 tggcttcgtttttggaacccagccataaggaaattatc 6865299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 22080390 - 22080438
Alignment:
Q  168 tggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattag 216  Q
    |||||||||||||||||||| |||| ||||| |||||| | ||||||||    
T  22080390 tggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag 22080438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 15960577 - 15960640
Alignment:
Q  4 ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcctta 67  Q
    ||||||| ||||||||||||||||| || |||||||||||| |  |||||||  ||||||||||    
T  15960577 ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatcctta 15960640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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