View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_3 (Length: 662)
Name: NF0851_low_3
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 29 - 654
Target Start/End: Complemental strand, 32872992 - 32872367
Alignment:
| Q |
29 |
aatatatgcgtacgtaccataatatgttatgtcgcaaatagacataaaagctatatcaatgttccttnnnnnnnnnnnnnnctacatcgatgctatattt |
128 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
32872992 |
aatatatacgtacgtaccataatatgttatgtcgcaaatagacataaaagctatatcaatgttccttaaaaaaaaaaaaatctacatcgatgttatattt |
32872893 |
T |
|
| Q |
129 |
attcaatttttaggactcttcttccgcatactttataccttataattgtatcaaaatgagcttacacaacaccacattatgttatgtgcttagtgttgta |
228 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32872892 |
attcaatttttaggactcttcttccgtatactttataccttataattgtatcaaaatgatcttacacaacaccacattatgttatgtgcttagtgttgta |
32872793 |
T |
|
| Q |
229 |
accttaagataatgagtttgaatcccttaaatacagttgtaaaacccttataattgaaccaaaataatcccttatatataca----------cacacata |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| | |
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| T |
32872792 |
accttaagataatgagttcgaatcccttaaatacagttgtaaaacccttataattgaaccaaaataatcccatatatatatatatatatatacacactca |
32872693 |
T |
|
| Q |
319 |
tggtagatacatctagagggttaaactgctttatgtaatactaaatctgtcccatgtccccaaaatatctaaatgatatccaaagatacaacaaataaaa |
418 |
Q |
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|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32872692 |
tggtagatacatctcgaaggtta----------tgtaatactaaatctgtcccatgtccccaaaatatctaaatgatatacaaagatacaacaaataaaa |
32872603 |
T |
|
| Q |
419 |
gccctaaaagagtaggtttgtactgccatcaaacaaacaaatcagtcaagcaaaattcaattgcttcatgaatttttactnnnnnnncgaacaaacacct |
518 |
Q |
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| T |
32872602 |
gccctaaaagagtaggtttgtactgccatcaaacaaacatatcagtcaagcaaaattcaattgcttcatgaatttttactaaaaaaacgaacaaacacct |
32872503 |
T |
|
| Q |
519 |
atgtcaagtcaagcctcatgaacttctactgaatccttcactgttctcatttccatttccctttgaaaacggatgctannnnnnncaagtttgtcatgtc |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||| | |
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| T |
32872502 |
atgtcaagtcaagcctcatgaacttctactgaatccttcactgttctgatttccatttccctttcaaaacggatgctatttttttcaactttgtcatgcc |
32872403 |
T |
|
| Q |
619 |
ttcttctttgtgttgttgactattatagtctctgct |
654 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||| |
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| T |
32872402 |
ttcttctctgtgttgttgactattgtagtctctgct |
32872367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 32874813 - 32874649
Alignment:
| Q |
129 |
attcaatttttaggactcttcttccgcatactttataccttataattgtatcaaaatgagcttacacaacaccacattatgttatgtgcttagtgttgta |
228 |
Q |
| |
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||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32874813 |
attcaatttttaggaggctttttctgcatactttataccttataattgaatcaaaaggagcttacacaacaccacattattttatgtgcttagtgttgta |
32874714 |
T |
|
| Q |
229 |
accttaagataatgagtttgaatcccttaaatacagttgtaaaacccttataattgaaccaaaat |
293 |
Q |
| |
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| T |
32874713 |
accttaagatattgagttcgaatcccttaaatagagttgtaaaaccctcataattgaatcaaaat |
32874649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 32874664 - 32874562
Alignment:
| Q |
170 |
ataattgtatcaaaatgagcttacacaacaccacattatgttatgtgcttagtgttgtaaccttaagataatgagtttgaatcccttaaatacagttgta |
269 |
Q |
| |
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||||||| |||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||||| || ||| |||||| || |||||||||||| |
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| T |
32874664 |
ataattgaatcaaaatgagcttactaaacaatgcatcattttatgtgcttagtgttgtaatcttaagatactgtgttcgaatcctttgaatacagttgta |
32874565 |
T |
|
| Q |
270 |
aaa |
272 |
Q |
| |
|
||| |
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|
| T |
32874564 |
aaa |
32874562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 32866481 - 32866381
Alignment:
| Q |
136 |
ttttaggactcttcttccgcatactttataccttataattgtatcaaaatgagcttacacaacaccacattatgttatgtgcttagtgttgtaaccttaa |
235 |
Q |
| |
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|||||||| ||| ||||| ||||||||| |||||||||| ||||||||| ||||| ||||| ||||| || ||||||| ||||| |||||||||||| |
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| T |
32866481 |
ttttaggaggctttttccgtatactttatctcttataattgaatcaaaatgtgcttaggcaacatcacatcattttatgtgattagttttgtaaccttaa |
32866382 |
T |
|
| Q |
236 |
g |
236 |
Q |
| |
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| |
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|
| T |
32866381 |
g |
32866381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 32866549 - 32866499
Alignment:
| Q |
38 |
gtacgtaccataatatgttatgtcgcaaatagacataaaagctatatcaat |
88 |
Q |
| |
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||||||||||||||||||| |||| |||||||||| |||||| | |||||| |
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|
| T |
32866549 |
gtacgtaccataatatgttgtgtcacaaatagacacaaaagcgacatcaat |
32866499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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