View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_30 (Length: 303)
Name: NF0851_low_30
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_30 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 2149943 - 2150218
Alignment:
| Q |
28 |
caattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttct |
127 |
Q |
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| T |
2149943 |
caattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttct |
2150042 |
T |
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| Q |
128 |
atgttcgtaattgtttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattcccc |
227 |
Q |
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| T |
2150043 |
atgttcgtaattgtttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattcccc |
2150142 |
T |
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| Q |
228 |
ataccactggaaaaaagtatatatttttagcctttggagctgtagcattcccacctacattgcaatttatttatat |
303 |
Q |
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| T |
2150143 |
ataccactggaaaaaagtatatatttttagcctttggagctgtagcattcccacctacattgcaatttatttatat |
2150218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 2140934 - 2141136
Alignment:
| Q |
28 |
caattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttct |
127 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140934 |
caattgtccactctctgctagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttct |
2141033 |
T |
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| Q |
128 |
atgttcgtaattgtttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattcccc |
227 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| || ||||| |
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| T |
2141034 |
atgttcgtaattgtttgtgtttgttgggtatgattttgctgtctatctttacatagggatagagttacccacatgaagagcaaaattccagttagtcccc |
2141133 |
T |
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| Q |
228 |
ata |
230 |
Q |
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||| |
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| T |
2141134 |
ata |
2141136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 2145468 - 2145694
Alignment:
| Q |
28 |
caattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttct |
127 |
Q |
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|||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |
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| T |
2145468 |
caattgtccactctctactagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttct |
2145567 |
T |
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| Q |
128 |
atgttcgtaattgtttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattcccc |
227 |
Q |
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||| | |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| ||||| || ||||| ||||| || ||||| |
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| T |
2145568 |
atgatgataattgtttgtgtttgctggatatggttttgctgtctatctttacatagggatagagttacccccatgaggagcaaaattccagttactcccc |
2145667 |
T |
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| Q |
228 |
ataccactggaaaaaagtatatatttt |
254 |
Q |
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|||| ||| ||||||||| ||||||| |
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| T |
2145668 |
atactacttcaaaaaagtagatatttt |
2145694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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