View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_34 (Length: 289)
Name: NF0851_low_34
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 13447301 - 13447054
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13447301 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatat |
13447202 |
T |
|
| Q |
114 |
tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447201 |
tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag |
13447102 |
T |
|
| Q |
214 |
cactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447101 |
cactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
13447054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 13419750 - 13419503
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat |
113 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||| | |
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| T |
13419750 |
aggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatct |
13419651 |
T |
|
| Q |
114 |
tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag |
213 |
Q |
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| T |
13419650 |
tgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgag |
13419551 |
T |
|
| Q |
214 |
cactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13419550 |
cactttgtgattcgcattcctgatagcttacctcttgatgctgccggt |
13419503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 13426641 - 13426394
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat |
113 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| | |
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| T |
13426641 |
aggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatct |
13426542 |
T |
|
| Q |
114 |
tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag |
213 |
Q |
| |
|
||||||||||||| || || | || |||| || ||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| ||| |
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| T |
13426541 |
tgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgag |
13426442 |
T |
|
| Q |
214 |
cactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13426441 |
cactttgtgattcgcattcctgatagcttacctcttgatgttgccggt |
13426394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 13413400 - 13413168
Alignment:
| Q |
19 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga |
118 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| || || ||| || ||||||||||||| || || || ||||| ||| || |||||| |
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| T |
13413400 |
ggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgaga |
13413301 |
T |
|
| Q |
119 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
218 |
Q |
| |
|
|||||||| |||||| | |||| || |||| ||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
13413300 |
attactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactt |
13413201 |
T |
|
| Q |
219 |
tgtgattcgcattcctgatagcttacctcttga |
251 |
Q |
| |
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|||||||||||||||||| | | |||||||||| |
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| T |
13413200 |
tgtgattcgcattcctgacaacatacctcttga |
13413168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 13388997 - 13389234
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat |
113 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| ||||||||| ||| || | |
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| T |
13388997 |
aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatct |
13389096 |
T |
|
| Q |
114 |
tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag |
213 |
Q |
| |
|
||| |||||||| ||| || |||| |||| || |||| ||| ||||| || | ||| |||||||||| || |||||| |||||||||| ||| |
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| T |
13389097 |
tgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgag |
13389196 |
T |
|
| Q |
214 |
cactttgtgattcgcattcctgatagcttacctcttga |
251 |
Q |
| |
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|||| ||| ||| |||||||||| | ||||| ||||| |
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| T |
13389197 |
aacttcgtggttcacattcctgatggattaccacttga |
13389234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 13385176 - 13385288
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat |
113 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| || ||| ||||||||| ||| || | |
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| T |
13385176 |
aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatct |
13385275 |
T |
|
| Q |
114 |
tgagaattactgc |
126 |
Q |
| |
|
||| ||||||||| |
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|
| T |
13385276 |
tgaaaattactgc |
13385288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 13454252 - 13454143
Alignment:
| Q |
16 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattg |
115 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| || ||| ||||||||| || || ||| |
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| T |
13454252 |
gtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttg |
13454153 |
T |
|
| Q |
116 |
agaattactg |
125 |
Q |
| |
|
|||||||||| |
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|
| T |
13454152 |
agaattactg |
13454143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
| Q |
179 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
253 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| |
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|
| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
13454015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
| Q |
172 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
251 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| |
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|
| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga |
13393641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 13393404 - 13393477
Alignment:
| Q |
14 |
aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt |
87 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| |||||| |
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| T |
13393404 |
aggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt |
13393477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
159 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
233 |
Q |
| |
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|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
| Q |
16 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
56 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagt |
47601530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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