View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_39 (Length: 264)
Name: NF0851_low_39
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_39 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 8418202 - 8418452
Alignment:
| Q |
29 |
agacttggcctcataattgacttcctcaacaagcttggttgcattg---------aaca------acagaggccaggaagtagtaacgccaaccaactgc |
113 |
Q |
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| T |
8418202 |
agacttggcctcataattgacttcctcaacaagcttggttgcattggtttgtttcaacattgaacagagaggccacgaagtagtaacgccaacaaactgc |
8418301 |
T |
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| Q |
114 |
tccttcccacttggatttcttttatgcatcatacttgaattttatttaaatcacctatatttgtacaccctcaacaaaaattacatctattcaaaatctc |
213 |
Q |
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| T |
8418302 |
tccttcccacttggatttcttttatgcatcatacttgaattttatttacatcacttatatttgtacaccctcaacaaaaattacatctgttcaaaatctc |
8418401 |
T |
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| Q |
214 |
gttactcatatcacatcacaaacttatcaaaagaggattgctatacatagc |
264 |
Q |
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| T |
8418402 |
gttactcatatcacatcacaaacttatcaaaagaggattgctatacatagc |
8418452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 8374782 - 8374726
Alignment:
| Q |
90 |
gaagtagtaacgccaaccaactgctccttcccacttggatttcttttatgcatcata |
146 |
Q |
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| T |
8374782 |
gaagtagtaaagccaaccaactactactgcccacttggatttcttctatgcatcata |
8374726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 8440275 - 8440323
Alignment:
| Q |
90 |
gaagtagtaacgccaaccaactgctccttcccacttggatttcttttat |
138 |
Q |
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| T |
8440275 |
gaagtagtaaagccaaccaactactcctacccacatggatttcttttat |
8440323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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