View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_40 (Length: 263)
Name: NF0851_low_40
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 11980304 - 11980081
Alignment:
| Q |
30 |
taaagtatatgatatttgtcaatattcgaaaaccatgtgggttgtatttgtttccaggattgcagtggtgacaggatcaaacaaaggaattggattagag |
129 |
Q |
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|||||||||||| ||| ||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11980304 |
taaagtatatgaaattcgtccatattctaaaaccatgtgggttgtgtttgttgccaggattgcagtggtgacaggatcaaacaaaggaattggattagag |
11980205 |
T |
|
| Q |
130 |
atagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattggaaacacttaaagcatctggtt |
229 |
Q |
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||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11980204 |
atagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattggaaacacttaaagcatctggtt |
11980105 |
T |
|
| Q |
230 |
tatctgattttgttgtctttcatc |
253 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
11980104 |
tatctgattttgttgtatttcatc |
11980081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 11984632 - 11984442
Alignment:
| Q |
59 |
aaaccatgtgggttgtatttgtttccaggattgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaat |
158 |
Q |
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||||||| ||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||| ||||||| |
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| T |
11984632 |
aaaccatttgggttgaatttgtttgcaggattgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaat |
11984533 |
T |
|
| Q |
159 |
caaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtcttt |
249 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | || ||||||||||||||| |
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| T |
11984532 |
caaagttgtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcttctggtctttcagattttgttgtcttt |
11984442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 12004993 - 12004830
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12004993 |
tgcagtggtgactggatcgaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaa |
12004894 |
T |
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| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
12004893 |
agaggtcttcatgctttggaaacactcaaagcatctggtttatctgattttgttgtatttcatc |
12004830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 12010085 - 12009922
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||| ||| |||||||||||||| |
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| T |
12010085 |
tgcagtggtgacaggagcaaacaaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagatgagaaa |
12009986 |
T |
|
| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
12009985 |
agaggtcttcatgctttggaaacactcaaagcatctggtttatctgattttgttgtatttcatc |
12009922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 12014660 - 12014497
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
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|||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
12014660 |
tgcagtggtgactggagcaaacaaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
12014561 |
T |
|
| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
12014560 |
agaggtcttcatgctttggaaacactcaaagcctctggtttatctgattttgttgtatttcatc |
12014497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 11992108 - 11991945
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
11992108 |
tgcagtggtgacaggtgcaaacaaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatgagaaa |
11992009 |
T |
|
| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| | |||||||||||||| ||||||| |
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| T |
11992008 |
agaggtcttcatgctttggaaacacttaaagcttctggtctttctgattttgttgtatttcatc |
11991945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 11975169 - 11975006
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11975169 |
tgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaa |
11975070 |
T |
|
| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||| | |||||||||||||||||||| |||||||| |
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|
| T |
11975069 |
agaggtcttcatgctttgcaaacactcaaagcctatggtttatctgattttgttgcctttcatc |
11975006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 11999775 - 11999612
Alignment:
| Q |
90 |
tgcagtggtgacaggatcaaacaaaggaattggattagagatagttaagcagttagcttcatctggaatcaaagtggtgcttacagcaagagatgagaaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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|
| T |
11999775 |
tgcagtggtgacaggatcaaacaaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagatgagaaa |
11999676 |
T |
|
| Q |
190 |
agaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtctttcatc |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||| | || ||||||||| | ||||||| |
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|
| T |
11999675 |
agaggtcttcatgctttggaaacactcaaagcttctggtctttcagattttgttttatttcatc |
11999612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 43494722 - 43494684
Alignment:
| Q |
94 |
gtggtgacaggatcaaacaaaggaattggattagagata |
132 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
43494722 |
gtggtgacaggagcaaacaaaggaattggatttgagata |
43494684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 25859007 - 25859048
Alignment:
| Q |
157 |
atcaaagtggtgcttacagcaagagatgagaaaagaggtctt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
25859007 |
atcaaagtggtgctggcagcaagagatgagaagagaggtctt |
25859048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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