View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_low_43 (Length: 245)

Name: NF0851_low_43
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_low_43
NF0851_low_43
[»] chr5 (10 HSPs)
chr5 (5-216)||(41702754-41702965)
chr5 (5-135)||(41469655-41469785)
chr5 (64-135)||(41499628-41499699)
chr5 (73-134)||(41509401-41509462)
chr5 (54-134)||(41499525-41499605)
chr5 (67-135)||(41515440-41515508)
chr5 (73-135)||(41519624-41519686)
chr5 (165-217)||(41469881-41469933)
chr5 (165-217)||(41524534-41524586)
chr5 (129-169)||(41469833-41469873)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 41702965 - 41702754
Alignment:
Q  5 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702965 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 41702866  T
Q  105 aatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagcttcataattt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702865 aatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagcttcataattt 41702766  T
Q  205 tcttgcactttc 216  Q
    ||||||||||||    
T  41702765 tcttgcactttc 41702754  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
Q  5 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 104  Q
    ||||||||  ||||||||||||  ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| ||||||||||||    
T  41469655 attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac 41469754  T
Q  105 aatctttcttcttaacacatcaacttcattg 135  Q
    ||||||| ||||||  |||||||||||||||    
T  41469755 aatctttgttcttattacatcaacttcattg 41469785  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
Q  64 tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 135  Q
    ||||| ||| |||||||||||| ||||   |||||||||||||||||| ||||||||||| |||||||||||    
T  41499628 tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg 41499699  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
Q  73 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 134  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||    
T  41509401 ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt 41509462  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
Q  54 ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 134  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| ||  ||||| |||| ||| ||||||    
T  41499525 ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt 41499605  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
Q  67 aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 135  Q
    |||||| |||||||||||| ||||  |||||||||| || |||||||||||||||||| || |||||||    
T  41515440 aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg 41515508  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
Q  73 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 135  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||||    
T  41519624 ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg 41519686  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 41469881 - 41469933
Alignment:
Q  165 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttct 217  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||  |||||||    
T  41469881 tctatttaccttaacttctttcaaaagagcttcataactttcttttactttct 41469933  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 41524534 - 41524586
Alignment:
Q  165 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttct 217  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||| |||||||    
T  41524534 tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttct 41524586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 41469833 - 41469873
Alignment:
Q  129 ttcattgttcttcttttctaacgcttcattactttttctat 169  Q
    |||||||||||||||||||||| || ||||| |||||||||    
T  41469833 ttcattgttcttcttttctaactctacattagtttttctat 41469873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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