View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_low_9 (Length: 481)
Name: NF0851_low_9
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 38532629 - 38533101
Alignment:
| Q |
1 |
tattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagcagctgcattgttcatagccacagcgatcacaaccttcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38532629 |
tattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagtagctgcattgttcatagccacagcgatcacaaccttcg |
38532728 |
T |
|
| Q |
101 |
gtacatcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgacgacaacaatccctcaccgatccaactaagagccattcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532729 |
gtacatcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgaggacaacaatccctcaccgatccaactaagagccattcttca |
38532828 |
T |
|
| Q |
201 |
ctacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcgaccatgcaactttcttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532829 |
ctacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcgaccatgcaactttcttgtc |
38532928 |
T |
|
| Q |
301 |
ttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaatgggttcaaaccgttctta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532929 |
ttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaatgggttcaaaccgttctta |
38533028 |
T |
|
| Q |
401 |
aagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaacaaattcatctc |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
38533029 |
aagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagcaaactcatctc |
38533101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
367 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
283 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
380 |
Q |
| |
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|||||||||||||| || || ||| |||| || || | |||||||||| ||||||||| ||| |||||| |||| ||| || |||||||||||||| |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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