View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_4 (Length: 554)
Name: NF0920_low_4
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 75 - 546
Target Start/End: Complemental strand, 15886089 - 15885619
Alignment:
| Q |
75 |
gcattagtgcaaattttgacaccattaatatcaccattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggag |
174 |
Q |
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| T |
15886089 |
gcattagtgcaaattttgacaccattaatatcaccattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggag |
15885990 |
T |
|
| Q |
175 |
agaggggtctccttgccttaaccctctaccagaaataaaaggaacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcata |
274 |
Q |
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| T |
15885989 |
agaggggtctccttgccttaaccctctaccaggaataaaaggtacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcata |
15885890 |
T |
|
| Q |
275 |
atccatttgttctattgatgagagaaactcatttccatcataacccctttgagataattcaagtcaattatgtcctatgtcttgctaatatcaagcttca |
374 |
Q |
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| T |
15885889 |
atccatt-gttctattgatgagaaaaactcatttccatcataacccctttgagataattcaagtcaattatgtccgatgtcttgctaatatcaagcttca |
15885791 |
T |
|
| Q |
375 |
aaacaacatcgccatattttcctctaacttttacatagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgt |
474 |
Q |
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| T |
15885790 |
aaacaacatcgccatattttcctctaacttttacatagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgt |
15885691 |
T |
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| Q |
475 |
ttgtcatgttgacggttgatgggaaaatacatgtcaaaagccaaccacaccattgattacaaatttcatctc |
546 |
Q |
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| T |
15885690 |
ttttcatgttgacggttgatgggaaaatacatgtcaaaagccaaccacaccattgattacaaatttcatctc |
15885619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 408 - 541
Target Start/End: Complemental strand, 28959059 - 28958926
Alignment:
| Q |
408 |
catagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatg |
507 |
Q |
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|||||||||||||||||| |||||||||||||||||| | | ||||||||| | ||||||| ||||||||||| || | ||||||||||||| || ||| |
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| T |
28959059 |
catagagcaataggtcactaatctttcatagaaactttggactcacctttttggattagggatatgtttgtcatatttaaggttgatgggaaagtaaatg |
28958960 |
T |
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| Q |
508 |
tcaaaagccaaccacaccattgattacaaatttc |
541 |
Q |
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| T |
28958959 |
ttgaaagccaaccgcaatattgattaaaaatttc |
28958926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 8942357 - 8942306
Alignment:
| Q |
257 |
gtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
308 |
Q |
| |
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||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||| |
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| T |
8942357 |
gtttctacacacatcatgatccacttgatctattgatgagataaactcattt |
8942306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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