View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264-Insertion-2 (Length: 892)
Name: NF1264-Insertion-2
Description: NF1264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 8 - 892
Target Start/End: Complemental strand, 33121045 - 33120157
Alignment:
| Q |
8 |
cagcttccgttgcttaacctct-gctgcaaacaagcttttcaagaaaaccctcaagcttgtagaaagaggtaggtatatatctaacctctttgtataata |
106 |
Q |
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| T |
33121045 |
cagcttccgttgcttaacctcttgctgcaaacaagcttttcaagaaaaccctcaagcttgtaaaaagaggtaggtatatatctaacctctttgtataata |
33120946 |
T |
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| Q |
107 |
ggaccttgcaactgcaggagcaacagagaggcctaaatgttgtgttttagtgatgaccaggccttcaaaaggtgaactatctcaagatgtacaataaaac |
206 |
Q |
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| T |
33120945 |
ggaccttgcaactgcaggagcaacaaagaggcctaaatgttgtgttttagtgatgaccaggcctttaaaaggtgaactatctcaagatgtacaagaaaac |
33120846 |
T |
|
| Q |
207 |
aatagagaaaaagatgaatgtgcgtttgagatgataatattgataaaatgaattatactaaccatcacttctttagaatttaaaagag--ctcggcggtt |
304 |
Q |
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| T |
33120845 |
aatagagaaaaagatgaatgtgcgtttgagatgataatattgacggaatgaattatactaaccatcacttctttagaatttaaaagagtactcggcggtt |
33120746 |
T |
|
| Q |
305 |
ggctatcattctgccaatattgtcatctcaaacacacagttgannnnnnnnnnnnnnnnnnnnn-aaacttataacatattatttacccttagaatttaa |
403 |
Q |
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| T |
33120745 |
ggctatcattctgtcaatattgtcatctcaaacacacaattgatctttttttctctcatttttttaaacttataacatattatttacccttagaatttaa |
33120646 |
T |
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| Q |
404 |
aaattctaaaggagagtattggatttaaatttattctaaaggtaaatttttctgaacaatgttggaataaaatttacataattacaaaaaatttagttcc |
503 |
Q |
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| T |
33120645 |
aaattctaaaggagagtattggatttaaatttattccaa-ggtaaatttttctgaacaatattggattaaaatttacataattacaaaaaatttagttcc |
33120547 |
T |
|
| Q |
504 |
taaaggtcaatttgttcataaaaaagtccaaccaaaaagcatatgttagttaacttgaagtacacggtataaataaatgaaagaagaacatagagcaata |
603 |
Q |
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| T |
33120546 |
taaaggtaaatttgttcataaaaaagtccaaccaaaaagcatatgttagttaacttgaagtacacggtataaataaatgaaagaagaacatagagcaata |
33120447 |
T |
|
| Q |
604 |
tactggattcaacttggtacattatttaaattgtacatatatgaaatggggtatacacatacatatatataatggccttgttcaatttatttatttttcg |
703 |
Q |
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| T |
33120446 |
tgctgtattcaacttggtacattatttaaattgtacatatatgaaatggggtatacacgtac--atatataatggccttgttcaatttatttatttttcg |
33120349 |
T |
|
| Q |
704 |
atgacatatataggactcgtctcgagcttaacttatgaactangtttgttcccaagatcgaaaccnagttttctttcttcaagtaatttttccatctcct |
803 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33120348 |
atgacatatataggactcgtcacgagcttaacttatgagctaggtttgttcccaagatcgaaaccaagttttctttcttcaagtaatttttccatctcct |
33120249 |
T |
|
| Q |
804 |
ccataggaactcccttagtttctggtac-aaaataataac-aaaacaatggtcatacaactaattactcc-aaagccaggaatgtccatgca |
892 |
Q |
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| T |
33120248 |
ccattggaactcccttagtttctgggacaaaaataataacaaaaacaatggccatacaactaattactccaaaagccaggaatgtccatgca |
33120157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 45933919 - 45933825
Alignment:
| Q |
106 |
aggaccttgcaactgcaggagcaacagagaggcctaaatgttgtgttttagtgatgaccaggccttcaaaaggtgaactatctcaagatgtacaa |
200 |
Q |
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||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |
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| T |
45933919 |
aggaccttgcaacggcaggagcaacgaagaggccaacttgttgtgttttagtgatgaccaagccttcaaagggtgaactatctcaagaggtacaa |
45933825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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