View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264-Insertion-3 (Length: 824)
Name: NF1264-Insertion-3
Description: NF1264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264-Insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 522
Target Start/End: Complemental strand, 23840194 - 23839660
Alignment:
| Q |
7 |
atgtttcaatttgtgaattgatcagattatgtccgcatcatccaaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23840194 |
atgtttcaatttgtgaattgatcagattgtgtccgcatcatccaaatccgtttttacacttgatgagaaagagcgcgagaagaatgtcgaagaaacaact |
23840095 |
T |
|
| Q |
107 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttggtagcattctgga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
23840094 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttcgtagca-tctgga |
23839996 |
T |
|
| Q |
207 |
tccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23839995 |
tccctctagttcaagacataatagggttgcaattgttcacagctgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgt |
23839896 |
T |
|
| Q |
307 |
gaaggaaactcttcctccacgagaacctcttttcgccttttttaaaggtcgttatgaaagccttcttgccgcttcaaagtagat-agtgtgct------- |
398 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| | ||| || |
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|
| T |
23839895 |
gaaggaaactattcctccaagagagcctcttttcgccttttttaaaggtcgctatgagagccttcttgctgcttcaaaatagatcaatgtactgctgata |
23839796 |
T |
|
| Q |
399 |
---------gagactcggaattttaagtttatgtactattatctgtcattgagtttttgttgtaaggat----tttctaaataatgtttttgtaatgtga |
485 |
Q |
| |
|
|||| || |||||||| ||||||| | | |||||||| |||||||| ||||||| ||||| ||||| |||||| |||| |||||||| |
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| T |
23839795 |
tagaatatcgagagtcagaattttatgtttatgaattcttatctgttattgagttcttgttgttaggatttcatttctgaataat-attttataatgtga |
23839697 |
T |
|
| Q |
486 |
gatttctccatgtgaaatctatggatattgttgtcat |
522 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
23839696 |
gatttctccatgtgaaatctaaggatattgttgtcat |
23839660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 562
Target Start/End: Complemental strand, 23843915 - 23843345
Alignment:
| Q |
11 |
ttcaatttgtgaattgatcagattatgtccgcatcatccaaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgagg |
110 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | |||| |||||||||||| | |||||||||||||| |||||||||||| | |||||| |||| |||| |
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|
| T |
23843915 |
ttcaatttgtgaattcttcagattgtgtccacgtcatttaaatccgttttttcgcttgatgagaaagagcgcgagaagaatattgaagaagcaaccgagg |
23843816 |
T |
|
| Q |
111 |
ctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttggtagcattctggatccc |
210 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||| |
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|
| T |
23843815 |
ctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagagtttaactttgtcgatattgctgctgttttcgtagcattttgggtccc |
23843716 |
T |
|
| Q |
211 |
tctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaag |
310 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23843715 |
tctagttcaagacataaccgagctgcaattgttcacagctgaaaagttcccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaag |
23843616 |
T |
|
| Q |
311 |
gaaactcttcctccacgagaacctcttttcgccttttttaaaggtcgttatgaaagccttcttgccgcttcaaagtag-----------------atagt |
393 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| |
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|
| T |
23843615 |
gaaactcttcctcctagagagcctcttttcgccttttttaaaggtcgttatgagagccttcttgcggcttcaaaatagatcaatgcactgctgatataga |
23843516 |
T |
|
| Q |
394 |
gtgctgagactcggaattttaagtttatgtactattatctgtcattgagtttttgttgtaaggat----tttctaaataatgtttttgtaatgtgagatt |
489 |
Q |
| |
|
|||| || | || ||| |||| ||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
23843515 |
gtgccgaaagtcagaa-tttatgtttatgaattattatctgtcattgagtttttgttgttaggatttcatttctaaataatgtttttgtaatgtgagatt |
23843417 |
T |
|
| Q |
490 |
tctccatgtgaaatctatggatattgttgtcatgtttccaaatttcaattaacaaagaaaagggtgtcttttt |
562 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||| || | ||||||||| || || |||||||| ||||| |
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|
| T |
23843416 |
tctccatgtgaaatctaagaatattgttgtcat-ttttcatacttcaattaataatgagaagggtgttttttt |
23843345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 68 - 313
Target Start/End: Complemental strand, 23860992 - 23860747
Alignment:
| Q |
68 |
gatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttta |
167 |
Q |
| |
|
|||||||| || ||| |||||||||| |||||| |||| |||||||| ||| ||||| |||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
23860992 |
gatgagaaggagcgccagaagaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagatta |
23860893 |
T |
|
| Q |
168 |
actttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagct |
267 |
Q |
| |
|
|||||||||||||||||||||| || |||| || ||||||||| | ||||||||||| | ||| ||||||||| ||||||||||| ||||||||| |
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|
| T |
23860892 |
actttgtggatattgctgctgtgttcatagctttttggatccctttgattcaagacatagctgaattgaaattgttcaatgctgaaaagtatccaaagct |
23860793 |
T |
|
| Q |
268 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaa |
313 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
23860792 |
ttacaaatggagccaagaatttctcaaccatcctgctgtgaaggaa |
23860747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 68 - 312
Target Start/End: Complemental strand, 23864538 - 23864294
Alignment:
| Q |
68 |
gatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttta |
167 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| |||||| ||||| ||| |||| ||||||||||||||| |||| |||||| ||||| ||| || |
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|
| T |
23864538 |
gatgagaaagagcgcgagaagaatattgaagaatcaactggagctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattg |
23864439 |
T |
|
| Q |
168 |
actttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagct |
267 |
Q |
| |
|
|||||||||||| ||||||| || |||| || ||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||| ||||||||| |
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|
| T |
23864438 |
gttttgtggatatttctgctgtgttcatagctttttggatccctttgtttcaagacttaatagggttgaaatggttcactgctgaaaagtatccaaagct |
23864339 |
T |
|
| Q |
268 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaagga |
312 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
23864338 |
ttacaaatggagccaagaatttctcaaccatccaattgtgaagga |
23864294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 695 - 819
Target Start/End: Complemental strand, 23839618 - 23839495
Alignment:
| Q |
695 |
ataacaacgatatgtaacttcttttataatctgatttttatatatgcaaaatttgtcctaaacctaaatccaaattaactagttcccctgcatgaaacaa |
794 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
23839618 |
ataacaaagatatgtaaattcttttgtaatctgattttt-tatatgcaaaatttgtcctaaccctaaatccaaattaacttgttcccctgtatgaaacta |
23839520 |
T |
|
| Q |
795 |
ggctgcatgatttacatattatatc |
819 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
23839519 |
ggctacatgatttacatattatatc |
23839495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 67 - 336
Target Start/End: Complemental strand, 23856951 - 23856682
Alignment:
| Q |
67 |
tgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttt |
166 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||| ||||||||| ||| ||||| |||||||| |||||| |||| ||||||||| || ||| || |
|
|
| T |
23856951 |
tgatgagaaagagcgcgagaagaatgttgaaggaacaattgaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagatt |
23856852 |
T |
|
| Q |
167 |
aactttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagc |
266 |
Q |
| |
|
||||||||||||| ||||| | |||| || ||||||||| | ||||||| |||| ||||||||||||||| | ||||||||||| ||| || | |
|
|
| T |
23856851 |
ggaattgtggatattgcagctgtgtacatagctttttggatccctttgattcaagaaataacagggttgcaattgttgaatgctgaaaagtgtcccaaac |
23856752 |
T |
|
| Q |
267 |
tttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctccacgagaacctct |
336 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| |||| ||||||| | | ||||| |||||||||| |
|
|
| T |
23856751 |
tttcgaagtggagccaagaatttctcaaccatccaattgttaaggaaaatatgcctcctagagaacctct |
23856682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 23853230 - 23853367
Alignment:
| Q |
50 |
aaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtact |
149 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||| | ||||||| | |||||||| ||||||||| ||||||||||||||| |||| || |
|
|
| T |
23853230 |
aaatctgtttttataccggatgagaaagagcgcgagaaggctcgcgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttct |
23853329 |
T |
|
| Q |
150 |
ttggaggagaagagtttaactttgtggatattgctgct |
187 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
23853330 |
ttggaggagaggagattagctttgtggatattgctgct |
23853367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 23850896 - 23850976
Alignment:
| Q |
107 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct |
187 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23850896 |
gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaagaaataggctttgtggatattgctgct |
23850976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 23855810 - 23855890
Alignment:
| Q |
107 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct |
187 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||| | |||| |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
23855810 |
gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaggagaagagattggttttgtggatattgctgct |
23855890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 23801151 - 23801076
Alignment:
| Q |
65 |
cttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagg |
140 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||||||| ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
23801151 |
cttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcattttcttgagaatgagctcaagg |
23801076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 23815784 - 23815714
Alignment:
| Q |
65 |
cttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
135 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
23815784 |
cttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcaatttcttgagaatgagct |
23815714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 23805912 - 23805843
Alignment:
| Q |
66 |
ttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
135 |
Q |
| |
|
|||||||||||||||| ||||||| | | || ||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
23805912 |
ttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcgatttcttgagaatgagct |
23805843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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