View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264-Insertion-4 (Length: 794)
Name: NF1264-Insertion-4
Description: NF1264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264-Insertion-4 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 8 - 794
Target Start/End: Original strand, 39770067 - 39770853
Alignment:
| Q |
8 |
gccacatcatcaagtttgctttataatgatcaacaatcaacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39770067 |
gccacatcatcaagtttgctttataatgatcaac---caacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcaca |
39770163 |
T |
|
| Q |
108 |
tgagctaaagaaattatatgtatacgagaggtaattaatccatatactcattgtcttatatagttttggatggagaattatgttgaagctcccaacactc |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39770164 |
tgagctaaataaattatatgtatacgagaggtaattaatccatatactcattgtcttatatagttttggatggagaattatgttgaagctcccaacactc |
39770263 |
T |
|
| Q |
208 |
ttctatatacttttacttgtaataattttagaaataaaatcctataacaaattgagtttgccatatat----acaaacaaaaacactagttattatttcc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39770264 |
ttctatatacttttacttgtaataattttagaaataaaatcctataacaaattgagtttgccatatattaaaacaaacaaaaacactagttattatttcc |
39770363 |
T |
|
| Q |
304 |
tccattnnnnnnnn-gttattatttccattgcaacatacatggaaaatgaaaaattaggagatagcacacacaaaaa-gttgcttaaaccataaaacaac |
401 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39770364 |
tccattaaaaaaaaagttattatttccattgcaacatacatggaaaatgaaaaattaggagatagcacacacaaaaaagttgcttaaaccataaaacaac |
39770463 |
T |
|
| Q |
402 |
acccaaatatccnnnnnnnnnnnnngttttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaac |
501 |
Q |
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| T |
39770464 |
acccaaatatcccaaaaaaaag---gtcttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagccacccaagcactaac |
39770560 |
T |
|
| Q |
502 |
atatggtcttgattcaaacaatttcttgctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctccc |
601 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39770561 |
ataaggtcttgattcaaacaatttcttgctctgtgacttcatcaagtaataaagggagggtaagtgatgcagatccaccaaggtgaaagagtcacctccc |
39770660 |
T |
|
| Q |
602 |
aagtatttagatttagacaatcttttctcatacacatcaagaatgatatccaacttggcttcattctcttcaacaacatttgaatccaaaggaattccaa |
701 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39770661 |
aagtatttagatttagacaatcttttctcatacacatcaagaatgatatccaacttggcttcattctcttccacaacatttgaatccaaaggaattccaa |
39770760 |
T |
|
| Q |
702 |
ataaagtctttatccccaattcccaaacaagtattgatgctacttgatcgtagtgtaggctttccacttcagaccacacactcattattgcca |
794 |
Q |
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| T |
39770761 |
ataaagtctttatccccaattcccaaacaagtattgatgctacttgatcgtagtgtaggctttccacttcagaccacacactcattattgcca |
39770853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 430 - 794
Target Start/End: Original strand, 39755568 - 39755932
Alignment:
| Q |
430 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
529 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||| |
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| T |
39755568 |
ttaattaggtatcatggcaaggacttcagaccaagctggtcttgcagtgatatcagccacccaagcactaacatgaggtcttgattcaaaaagcttcttg |
39755667 |
T |
|
| Q |
530 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcccaagtatttagatttagacaatcttttct |
629 |
Q |
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|| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||| || | |||||||||||||| |
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| T |
39755668 |
ctttgtgacttcatcaagtaatgaagagaaggtaaatgatgcaaatccaccaaggtgaaagagtcacctccaaagtatttggactcagacaatcttttct |
39755767 |
T |
|
| Q |
630 |
catacacatcaagaatgatatccaacttggcttcattctcttcaacaacatttgaatccaaaggaattccaaataaagtctttatccccaattcccaaac |
729 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39755768 |
catacacatcaagaatactatccaacttggcttcattctcttcaacaatttttggatccaaaggaattccaaataaagtctttatccccaattcccaaac |
39755867 |
T |
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| Q |
730 |
aagtattgatgctacttgatcgtagtgtaggctttccacttcagaccacacactcattattgcca |
794 |
Q |
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|||| |||||||||||||||| |||| |||| ||||||||||||||||| | ||||||||||| |
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| T |
39755868 |
aagttttgatgctacttgatcaaagtgatggctctccacttcagaccacacccccattattgcca |
39755932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 430 - 794
Target Start/End: Original strand, 39760922 - 39761286
Alignment:
| Q |
430 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
529 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||| |
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| T |
39760922 |
ttaattaggtatcatggcaaggacttcagaccaagctggtcttgcagtgatatcagccacccaagcactaacatgaggtcttgattcaaaaagcttcttg |
39761021 |
T |
|
| Q |
530 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcccaagtatttagatttagacaatcttttct |
629 |
Q |
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|| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||| || | |||||||||||||| |
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| T |
39761022 |
ctttgtgacttcatcaagtaatgaagagaaggtaaatgatgcaaatccaccaaggtgaaagagtcacctccaaagtatttggactcagacaatcttttct |
39761121 |
T |
|
| Q |
630 |
catacacatcaagaatgatatccaacttggcttcattctcttcaacaacatttgaatccaaaggaattccaaataaagtctttatccccaattcccaaac |
729 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39761122 |
catacacatcaagaatactatccaacttggcttcattctcttcaacaatttttggatccaaaggaattccaaataaagtctttatccccaattcccaaac |
39761221 |
T |
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| Q |
730 |
aagtattgatgctacttgatcgtagtgtaggctttccacttcagaccacacactcattattgcca |
794 |
Q |
| |
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|||| |||||||||||||||| |||| |||| ||||||||||||||||| | ||||||||||| |
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| T |
39761222 |
aagttttgatgctacttgatcaaagtgatggctctccacttcagaccacacccccattattgcca |
39761286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 430 - 635
Target Start/End: Original strand, 41527339 - 41527544
Alignment:
| Q |
430 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
529 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| |
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| T |
41527339 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttccagtgatatcagccacccaagcaataacataaggtcgtgattcaaacactttcttg |
41527438 |
T |
|
| Q |
530 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcccaagtatttagatttagacaatcttttct |
629 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
41527439 |
ctttgtgacttcatcaagtaatgaagggagggtaagtgatgcaaatccaccaaggtgaaagagtcacctcccaagtatttggactcggacaatcttttct |
41527538 |
T |
|
| Q |
630 |
cataca |
635 |
Q |
| |
|
|||||| |
|
|
| T |
41527539 |
cataca |
41527544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 498 - 635
Target Start/End: Original strand, 95 - 232
Alignment:
| Q |
498 |
taacatatggtcttgattcaaacaatttcttgctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacc |
597 |
Q |
| |
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||||||| || | ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||| |
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|
| T |
95 |
taacataaggacgtgattcaaacactttcttgctttgtgacttcatcaagtaatgaagggatggtaagtgatgcaaatccaccaaggtgaaacagtcacc |
194 |
T |
|
| Q |
598 |
tcccaagtatttagatttagacaatcttttctcataca |
635 |
Q |
| |
|
|||||||||||| || | ||||||||| ||||||||| |
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|
| T |
195 |
tcccaagtatttggactcggacaatcttatctcataca |
232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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