View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_39 (Length: 212)
Name: NF1265_low_39
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29199669 - 29199775
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncctctgctacttcaaattcaggtctgctttcgatgtttctgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29199669 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttttcctctgctacttcaaattcaggcctgctttcgatgtttctgtt |
29199768 |
T |
|
| Q |
101 |
tagccat |
107 |
Q |
| |
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||||||| |
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| T |
29199769 |
tagccat |
29199775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 19768151 - 19768260
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
19768151 |
cgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtttct |
19768250 |
T |
|
| Q |
98 |
gtttagccat |
107 |
Q |
| |
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|||||||||| |
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| T |
19768251 |
gtttagccat |
19768260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 12572461 - 12572353
Alignment:
| Q |
2 |
gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttctg |
98 |
Q |
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||||| ||| |||||||||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || ||||| |
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| T |
12572461 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
12572362 |
T |
|
| Q |
99 |
tttagccat |
107 |
Q |
| |
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||||||||| |
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|
| T |
12572361 |
tttagccat |
12572353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 13548925 - 13548817
Alignment:
| Q |
2 |
gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttctg |
98 |
Q |
| |
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||||| ||| |||||||||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || ||||| |
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| T |
13548925 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
13548826 |
T |
|
| Q |
99 |
tttagccat |
107 |
Q |
| |
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||||||||| |
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| T |
13548825 |
tttagccat |
13548817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 22082844 - 22082953
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag---nnnnnnncctctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||| |
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| T |
22082844 |
cgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggtatgccttcaatgtttct |
22082943 |
T |
|
| Q |
98 |
gtttagccat |
107 |
Q |
| |
|
|||| ||||| |
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|
| T |
22082944 |
gttttgccat |
22082953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37617131 - 37617082
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag |
50 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
37617131 |
cgtggctgtcagcgtgtgttatactgcattatgtgttttgtttatgtaag |
37617082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4351638 - 4351747
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
| |
|
|||||| ||| |||||||||| || ||||| | ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||| |
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| T |
4351638 |
cgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttaggtctgccttcgatttttct |
4351737 |
T |
|
| Q |
98 |
gtttagccat |
107 |
Q |
| |
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||||||||| |
|
|
| T |
4351738 |
ttttagccat |
4351747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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