View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1265_low_5 (Length: 530)
Name: NF1265_low_5
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 174 - 485
Target Start/End: Original strand, 1030071 - 1030383
Alignment:
| Q |
174 |
tttcatgcaggtagcaatttgtgagcaaacgtctagaagaatattgcacgatgttgcaccactcattacaagaaaatctactatttgacaaggaagaaat |
273 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1030071 |
tttcatgcgggtagcaatttgtgagcaaacgtctagaagaatattgcaggatgttgcaccactcactacaagaaaatctactatttgacaaagaagaaat |
1030170 |
T |
|
| Q |
274 |
ccttgagaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
1030171 |
ccttgagaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaag |
1030269 |
T |
|
| Q |
373 |
agattaagtccgcaaaatgnnnnnnncagggtatcgaaactacaattaaacacttaaaattccat--nnnnnnnngtacttttgttaattcacaaaaata |
470 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1030270 |
agatcaagtccgcaaaatgaaaaaaaca-ggtatcgaaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaata |
1030368 |
T |
|
| Q |
471 |
ttgttccattttaac |
485 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1030369 |
ttgttccattttaac |
1030383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 1029975 - 1030051
Alignment:
| Q |
101 |
attcgtaatgactgggataggatgtggaggattaattgtcatggattcgtgacatagctgattttggtttcggtttc |
177 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029975 |
attcgtaatgactgggataggacgtggaggattaattgtcatggattcgtgacatagctgattttggtttcggtttc |
1030051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
478 |
attttaaccaccatttacaattttgataatatattttcctat |
519 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 237 times since January 2019
Visitors: 8667