View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311-Insertion-2 (Length: 930)
Name: NF1311-Insertion-2
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311-Insertion-2 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 258 - 930
Target Start/End: Original strand, 37775844 - 37776516
Alignment:
| Q |
258 |
tggaacatggtttttgaatggacttgggtccaattacaatatcgtatgtgaagcatattctccggaaacaaatacttggagccctgttactgatggaatg |
357 |
Q |
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| T |
37775844 |
tggaacatggtttttgaatggacttgggtccaattacaatatcgtatgtgaagcatattctccagaaacaaatacttgaagccctgttactgatggaatg |
37775943 |
T |
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| Q |
358 |
gtaacgggtttgagtaataagctttgtatttcactgaataggcaactatatgcacttgattctcgggacagattgaagctcactgtatacgacagagaaa |
457 |
Q |
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| T |
37775944 |
gtaacgggtttgagtaataagctttgtatttcactgaataggcaactatatgcacttgattctcgggacaga--------------------cagagaaa |
37776023 |
T |
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| Q |
458 |
cggattcatggagaatgtttatggatagcaaactacttgatttgcatacctcacccgtggctgcacttgttccccttaaaggaaa--------------- |
542 |
Q |
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| T |
37776024 |
cggattcatggagaatgtttatggatagcaaactacttgatttgcatacctcacccgtggctgcacttgttccccttaaaggaaagttatgcattatata |
37776123 |
T |
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| Q |
543 |
-----atatgagcatcagtctagtggatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggaggaaggtcgtag |
637 |
Q |
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| T |
37776124 |
cgaaaatatgagcatcagtctagtagatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggaggaaggtcgaag |
37776223 |
T |
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| Q |
638 |
gattgcattgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttagggaaattgacgttttctttggtaaat |
737 |
Q |
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| T |
37776224 |
gattgcatt--atgctgtcaggtgcttgaagcctgagctacataatttatctgctaatatttgtcaacatttatggaaattgacgttttctttggtaaat |
37776321 |
T |
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| Q |
738 |
cagacaataggtgttaatctatttttcttgtgagggacatgtaggaaaattatgtttttcgtcttgtttggatgctgttaattttttattgacaat-aaa |
836 |
Q |
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| T |
37776322 |
cagacaataggtgttaatctatttttcttgtgagggacatgtaggaaaattatgtttttcgtcttgttcggatgctgttaattttttattgacaataaaa |
37776421 |
T |
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| Q |
837 |
tggagccattcattttcactctcaactatagtgcagatgttgcacatgcttatgttacaagatgtaagg-ttgttacatttactttttagcagta |
930 |
Q |
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| T |
37776422 |
tggagccattcattttcactctcaagtatattgcagatgttgcacatgcttatgttacaagatgtaaggtttgttacatttactttttagcagta |
37776516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 545 - 732
Target Start/End: Original strand, 37779929 - 37780116
Alignment:
| Q |
545 |
atgagcatcagtctagtggatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggaggaaggtcgtaggattgca |
644 |
Q |
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| T |
37779929 |
atgagcataagtttagtcgatgtttcaagtcctaataaacaagtagaaagctacccttacaattgggaaaatattgttggagaaggtttgaagggtaact |
37780028 |
T |
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| Q |
645 |
ttgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttagggaaattgacgttttctttgg |
732 |
Q |
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| T |
37780029 |
ttgtttgctgtcaggtgttggaagcctgagctacaaaacttatctgccaatcttagtcaacttttagggaaatcgacgctttctttgg |
37780116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 640 - 740
Target Start/End: Original strand, 37783384 - 37783484
Alignment:
| Q |
640 |
ttgcattgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttagggaaattgacgttttctttggtaaatca |
739 |
Q |
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| T |
37783384 |
ttgcgttgaacgctgtcaggtgcttgaagcttaagctacaaaatttatttgttgatctcagttaacatttagggaaatggacgttttgtttggaaaatca |
37783483 |
T |
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| Q |
740 |
g |
740 |
Q |
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| T |
37783484 |
g |
37783484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 733
Target Start/End: Original strand, 37781438 - 37781488
Alignment:
| Q |
683 |
tttatctgctaatatttgtcaacatttagggaaattgacgttttctttggt |
733 |
Q |
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| T |
37781438 |
tttatctgctaatattggttaacatttaaggaaattgacgttttctttggt |
37781488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 37782887 - 37782956
Alignment:
| Q |
144 |
aaaaattaatggagctgttagatttgctgaagtttatgaccacaaacaaaataggtggaatttcatctca |
213 |
Q |
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| T |
37782887 |
aaaaattaatagagatcttaaatttgctgaagtttatgaccgtaaccagaataggtggaatttcatctca |
37782956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 415
Target Start/End: Original strand, 37783069 - 37783164
Alignment:
| Q |
320 |
cggaaacaaatacttggagccctgttactgatggaatggtaacgggtttgagtaataagctttgtatttcactgaataggcaactatatgcacttg |
415 |
Q |
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| T |
37783069 |
cggaaacaaatacatagagcccggttagtagtggaatggtaaatggttggcgtgataagctttatatttcactgaatggacatctctatgcacttg |
37783164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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