View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_high_13 (Length: 253)
Name: NF1311_high_13
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_high_13 |
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| [»] scaffold0595 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0595 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 1204 - 1433
Alignment:
| Q |
23 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1204 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat |
1302 |
T |
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| Q |
123 |
gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
222 |
Q |
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| T |
1303 |
gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
1402 |
T |
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| Q |
223 |
caccgaagaatgaatcacatgaggtacaccc |
253 |
Q |
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| T |
1403 |
catcgaagaatgaatcacatgaggtacaccc |
1433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 8328828 - 8328599
Alignment:
| Q |
23 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8328828 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat |
8328730 |
T |
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| Q |
123 |
gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
222 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328729 |
gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
8328630 |
T |
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| Q |
223 |
caccgaagaatgaatcacatgaggtacaccc |
253 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
8328629 |
catcgaagaatgaatcacatgaggtacaccc |
8328599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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