View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1311_high_6 (Length: 412)
Name: NF1311_high_6
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1311_high_6 |
| |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 20302568 - 20302194
Alignment:
Q |
30 |
gcagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaa |
129 |
Q |
|
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| || ||||||| |
|
|
T |
20302568 |
gcagccaatcccagcatcgttggagtatgcagtgcaagagcaattctccaagcataagcttctgcatatatctggtgtaacagctacaccttctgcaaaa |
20302469 |
T |
|
Q |
130 |
tcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacac |
229 |
Q |
|
|
|| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
20302468 |
tcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacac |
20302369 |
T |
|
Q |
230 |
acccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgc |
329 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
T |
20302368 |
acccactagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacaaattgc |
20302269 |
T |
|
Q |
330 |
aaatgccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctc |
404 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
20302268 |
aaatgccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctc |
20302194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 34 - 405
Target Start/End: Original strand, 20063857 - 20064213
Alignment:
Q |
34 |
ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag |
133 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
20063857 |
ccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag |
20063956 |
T |
|
Q |
134 |
gaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacaccc |
233 |
Q |
|
|
||||||||||||| | ||||||||||||||||||||| ||||||||| | | ||||||| | ||| ||| | |||||||||||||| |
|
|
T |
20063957 |
gaactttaaccatcttcaatttcaaaaacccatcttcttttgtactttttg---------------tttcacatttcaatgatgtcctcctaacacaccc |
20064041 |
T |
|
Q |
234 |
attagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaat |
333 |
Q |
|
|
| ||||| |||||||||||||||||||||||| | | || ||||| ||||||||||||||||| | ||| ||| |||||||| |||| |||||||| |
|
|
T |
20064042 |
acctgtccagttgtttctattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgcaaat |
20064141 |
T |
|
Q |
334 |
gccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctca |
405 |
Q |
|
|
||||| || ||||||| ||||||||||| ||||| ||||||| || |||||| ||||||||||| |||| |
|
|
T |
20064142 |
gccccacatgtaccatatacatcacactctgattttcggctagtccatgtaacttgcacttctttctcctca |
20064213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 20230406 - 20230075
Alignment:
Q |
31 |
cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat |
130 |
Q |
|
|
|||||||||||| |||| | ||| || ||| ||||||||||||||||| ||||| |||||||| |||| |||||| | ||| || ||||||| |
|
|
T |
20230406 |
cagccaatcccatcatcatgagaatacgcaacacaagagcaattctccaaacataagattctgcatctgtcaggtgtcccttctaaaccttcagcaaaat |
20230307 |
T |
|
Q |
131 |
caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca |
230 |
Q |
|
|
| |||||||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||| || ||||| ||||||||| | | | | ||||||||| |
|
|
T |
20230306 |
ctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttacactgcaatggtttccgcctaacaca |
20230207 |
T |
|
Q |
231 |
cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca |
330 |
Q |
|
|
||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
T |
20230206 |
cccgccagtccagttgtttctattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgta |
20230107 |
T |
|
Q |
331 |
aatgccccgcaaataccataaacatcacactc |
362 |
Q |
|
|
|||||||| || | |||||||||||||||||| |
|
|
T |
20230106 |
aatgccccacatagaccataaacatcacactc |
20230075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 31 - 367
Target Start/End: Complemental strand, 20293365 - 20293029
Alignment:
Q |
31 |
cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat |
130 |
Q |
|
|
||||||||||||| ||| | ||| || ||| |||| |||||||| | ||| ||||| ||||||||||| || ||||| |||||| || |||||||| |
|
|
T |
20293365 |
cagccaatcccagaatcatgagaatacgcaatgcaggagcaattatgcaaacataagcttctgcatatttctggtgtaacagctacaccttctgcaaaat |
20293266 |
T |
|
Q |
131 |
caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca |
230 |
Q |
|
|
| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | | ||||||||||| |
|
|
T |
20293265 |
ctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacaca |
20293166 |
T |
|
Q |
231 |
cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca |
330 |
Q |
|
|
|||| |||||||| | | || ||||||| | |||||| | || |||| ||| |||||||||| || | ||| | |||||||||| |||| ||||| |
|
|
T |
20293165 |
cccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgca |
20293066 |
T |
|
Q |
331 |
aatgccccgcaaataccataaacatcacactccgatt |
367 |
Q |
|
|
|| ||||| || |||||||||||||||||||| |||| |
|
|
T |
20293065 |
aaggccccacatataccataaacatcacactctgatt |
20293029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 67 - 362
Target Start/End: Complemental strand, 20300458 - 20300163
Alignment:
Q |
67 |
gagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccat |
166 |
Q |
|
|
|||||||||| ||||||||| |||||||||||||| |||| |||||| || |||||| ||||||||||||||||| |||||| ||||||| |||| |
|
|
T |
20300458 |
gagcaattctacaagcataagcttctgcatatgtctggtgcaacagctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccat |
20300359 |
T |
|
Q |
167 |
cttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcctgtat |
266 |
Q |
|
|
||||||||||||| |||||||||||||||||||||| |||||| |||| | | ||||| ||||||||| |||||||||||||||||||||||| ||||| |
|
|
T |
20300358 |
cttcctttgtactggtggttttattgttgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccattcttgtat |
20300259 |
T |
|
Q |
267 |
gttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc |
362 |
Q |
|
|
| || ||||| ||||||||||| |||||| ||| | || | |||| |||| |||||||| ||||||| ||||||||| |||||||||| |
|
|
T |
20300258 |
cgacttgggttcaaattctttcaaacaggtgcaaattggtgaacttagtgaactacagcttgcaaataccccgcatataccataaccatcacactc |
20300163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 338
Target Start/End: Original strand, 20169383 - 20169687
Alignment:
Q |
34 |
ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag |
133 |
Q |
|
|
||||||||| |||| | ||| |||||| ||||||||||||||||||||||| |||||||||||||| | ||| ||| | || |||||||| | |
|
|
T |
20169383 |
ccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtctgatgtaacagtcaaaccttcagcaaaatctg |
20169482 |
T |
|
Q |
134 |
gaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacaccc |
233 |
Q |
|
|
||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | ||||||||| |
|
|
T |
20169483 |
gaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacaccc |
20169582 |
T |
|
Q |
234 |
attagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaat |
333 |
Q |
|
|
| ||||| || | | ||||||||| | |||||| | || ||||||||| |||||||||| || ||| | |||||||||||||||| |||||||| |
|
|
T |
20169583 |
accggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaat |
20169682 |
T |
|
Q |
334 |
gcccc |
338 |
Q |
|
|
||||| |
|
|
T |
20169683 |
gcccc |
20169687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 20272558 - 20272227
Alignment:
Q |
31 |
cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat |
130 |
Q |
|
|
|||||||||||| |||| | ||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||| | || || ||||||| |
|
|
T |
20272558 |
cagccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtcaggtgtaacgattaaaccttcagcaaaat |
20272459 |
T |
|
Q |
131 |
caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca |
230 |
Q |
|
|
| |||||||||| | | || | |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | |||||||||| |
|
|
T |
20272458 |
ctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggtgtcttcctaacaca |
20272359 |
T |
|
Q |
231 |
cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca |
330 |
Q |
|
|
|||| || ||| |||||| | |||||||| |||| || | || ||||| ||||||| ||||||||| | ||| | | || ||||| |||| |||||| |
|
|
T |
20272358 |
cccaccagaccagttgtttattttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatgaactacagattgca |
20272259 |
T |
|
Q |
331 |
aatgccccgcaaataccataaacatcacactc |
362 |
Q |
|
|
||||| || || |||||||||||||||||||| |
|
|
T |
20272258 |
aatgcgccacatataccataaacatcacactc |
20272227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 366
Target Start/End: Complemental strand, 20287994 - 20287659
Alignment:
Q |
34 |
ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag |
133 |
Q |
|
|
||||||||||| || ||| |||||| |||||||||||||||| |||||| ||||| |||||||| ||||| ||| || ||||||||||| |
|
|
T |
20287994 |
ccaatcccagcggtgtgagaatatgcaatgcaagagcaattctctaagcatcggcttctacatatgtctggtgtaagtgctgaaccttgtgcaaaatcag |
20287895 |
T |
|
Q |
134 |
gaactttaaccatgtgcaatttcaaaaacccatcttcctt---tgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca |
230 |
Q |
|
|
||||||||||||| | |||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||| | | || |||||||| |
|
|
T |
20287894 |
gaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttcacactgcaaaagtatccttctaacaca |
20287795 |
T |
|
Q |
231 |
cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca |
330 |
Q |
|
|
|||| |||||| |||| ||||||||| |||||| |||| | || ||||| ||| ||||||| ||||| | ||| |||||||| |||| |||| |
|
|
T |
20287794 |
cccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttcaatgaactacagcttgcg |
20287695 |
T |
|
Q |
331 |
aatgccccgcaaataccataaacatcacactccgat |
366 |
Q |
|
|
|||||||| || |||||||||| ||||| |||||| |
|
|
T |
20287694 |
aatgccccacatataccataaatgtcacattccgat |
20287659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 20242263 - 20242064
Alignment:
Q |
124 |
gcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcc |
223 |
Q |
|
|
|||||||| |||||||||||||| || | ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||| || |
|
|
T |
20242263 |
gcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacccttttacacagcaaaggtctctgcc |
20242164 |
T |
|
Q |
224 |
taacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattaca |
323 |
Q |
|
|
|||||||||| |||||| ||||||||| ||||||| | | || | || ||||| ||||||||||| ||||||| ||| | ||||||||||||||| |
|
|
T |
20242163 |
taacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactggtgagctcaatgaattaca |
20242064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 20090480 - 20090564
Alignment:
Q |
123 |
tgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacac |
207 |
Q |
|
|
||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||| |||| |
|
|
T |
20090480 |
tgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacac |
20090564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 363
Target Start/End: Complemental strand, 20278270 - 20277970
Alignment:
Q |
63 |
gcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatgtgcaatttcaaaaac |
162 |
Q |
|
|
|||||| |||||||||||||||| |||||||| ||||| ||||| |||||| | |||||| | || ||||| ||| | || |||||||||||| |
|
|
T |
20278270 |
gcaagaacaattctccaagcataggcttctgcaaatgtctggtgtaacagctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaac |
20278171 |
T |
|
Q |
163 |
ccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcct |
262 |
Q |
|
|
||||||||||| | | ||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| || | || ||||||||| | |
|
|
T |
20278170 |
gcatcttcctttctccgtgtggttttattgttatccctactacactgcaaagtggttctcctaacacacccaccggtccagttatgtccattccattctt |
20278071 |
T |
|
Q |
263 |
gtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc |
362 |
Q |
|
|
||||||| | || ||||| ||| ||| |||| | || | ||| | | ||||||| |||| ||||||||||||| || ||||| |||||||||||||| |
|
|
T |
20278070 |
gtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaactacagcttgcaaatgccccacatataccgtaaacatcacactc |
20277971 |
T |
|
Q |
363 |
c |
363 |
Q |
|
|
| |
|
|
T |
20277970 |
c |
20277970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 20262836 - 20262661
Alignment:
Q |
184 |
gttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaacc |
283 |
Q |
|
|
||||||||| ||| ||||||||||||||||| ||| | |||||||||||| |||||| ||||||||| ||||||| | | || | || ||||| | |
|
|
T |
20262836 |
gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc |
20262737 |
T |
|
Q |
284 |
ctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcaca |
359 |
Q |
|
|
|||||||||| ||||| | || | ||||||||||||||| ||| |||| | || || | ||||||||||||||| |
|
|
T |
20262736 |
ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcaca |
20262661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 20006889 - 20007034
Alignment:
Q |
221 |
tcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaatt |
320 |
Q |
|
|
|||||||||| |||||||||||||| | ||||||||| || || |||| |||| |||||||||| |||||| || |||| ||||| | |||||| |
|
|
T |
20006889 |
tcctaacacatccattagtccaattttgtctattccactcttgattgtttcttggttcaaacccttccaaacacctacaaattggcgacccttttgaatt |
20006988 |
T |
|
Q |
321 |
acaaattgcaaatgccccgcaaataccataaacatcacactccgat |
366 |
Q |
|
|
||||||| |||||| || |||| |||||||| |||||| |||||| |
|
|
T |
20006989 |
acaaattccaaatgaaccacaaaaaccataaagatcacaatccgat |
20007034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 20282599 - 20282549
Alignment:
Q |
312 |
caatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc |
362 |
Q |
|
|
|||||||||||| ||||||||||||| || ||||||||| |||||||||| |
|
|
T |
20282599 |
caatgaattacagcttgcaaatgccccacatataccataagcatcacactc |
20282549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 19937567 - 19937491
Alignment:
Q |
220 |
ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct |
296 |
Q |
|
|
||||||||||| || | |||||||| | | |||||||||||| | |||| |||| |||||||||||||||||||| |
|
|
T |
19937567 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagct |
19937491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 19968706 - 19968630
Alignment:
Q |
220 |
ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct |
296 |
Q |
|
|
||||||||||| || | |||||||| | | |||||||||||| | |||| |||| |||||||||||||||||||| |
|
|
T |
19968706 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagct |
19968630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 47602093 - 47602169
Alignment:
Q |
220 |
ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct |
296 |
Q |
|
|
||||||||||||||| |||||| || | ||||||||||| || | |||| |||| ||||||||||||||| |||| |
|
|
T |
47602093 |
ctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagct |
47602169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 367
Target Start/End: Original strand, 40825236 - 40825480
Alignment:
Q |
123 |
tgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctc |
222 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||| | | || |
|
|
T |
40825236 |
tgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacactgcaaaagtgtcctt |
40825335 |
T |
|
Q |
223 |
ctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattac |
322 |
Q |
|
|
|||||||||||| ||||| |||| ||||||||| |||||| |||| | || ||||| ||| ||||||| ||||| | || |||||||| ||| |
|
|
T |
40825336 |
ctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactac |
40825435 |
T |
|
Q |
323 |
aaattgcaaatgccccgcaaataccataaacatcacactccgatt |
367 |
Q |
|
|
| ||| ||||||||| || ||||||||||| ||||| ||||||| |
|
|
T |
40825436 |
agcttgaaaatgccccacatataccataaacgtcacattccgatt |
40825480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 361
Target Start/End: Original strand, 40820476 - 40820806
Alignment:
Q |
31 |
cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat |
130 |
Q |
|
|
||||||||||||| ||| | ||| || ||| ||| |||||||| | || ||||| |||||||||||||| ||||| |||||| || |||||| | |
|
|
T |
40820476 |
cagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcagacataagcttctgcatatgtctggtgtaacagctacaccttctgcaaatt |
40820575 |
T |
|
Q |
131 |
caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca |
230 |
Q |
|
|
| | ||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| ||||| | | ||||||||||| |
|
|
T |
40820576 |
ctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacaca |
40820675 |
T |
|
Q |
231 |
cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca |
330 |
Q |
|
|
|| | |||||||| | | || ||||||| | |||||| | || |||| ||| | |||||||| || | ||||| ||||||| || |||| ||||| |
|
|
T |
40820676 |
ccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgca |
40820775 |
T |
|
Q |
331 |
aatgccccgcaaataccataaacatcacact |
361 |
Q |
|
|
||||| | || ||||||||||||||||||| |
|
|
T |
40820776 |
aatgctgcacatataccataaacatcacact |
40820806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12911 times since January 2019
Visitors: 8269