View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_high_7 (Length: 358)
Name: NF1311_high_7
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 98 - 353
Target Start/End: Original strand, 20622913 - 20623165
Alignment:
| Q |
98 |
ttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaannnnnnnaagttgaattgggattattatcgttgtagcttgc |
197 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20622913 |
tttttccaagtgaattgtgattattattgttggaaact---tatatggctgagaccaaatttttttaagttgaattgggattattatcgttgtagcttgc |
20623009 |
T |
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| Q |
198 |
acctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacctattaactgttctgattcaaagctcctgtgaaataacaaag |
297 |
Q |
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||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
20623010 |
acctaaggcgcttagacaaactactgaagacactccaaccgaaatataactgaagcaccaattaactgttctgattcaaagctcctgtgaaataataaag |
20623109 |
T |
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| Q |
298 |
tgtttgtaaatgatatcaaaagctgcatcatcaagcttaatgttgggagaaagata |
353 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20623110 |
tgtctgtaaatgatatcaaaagctgaatcatcaagcttaatgttgggagaaagata |
20623165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 98 - 328
Target Start/End: Original strand, 20595888 - 20596117
Alignment:
| Q |
98 |
ttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaannnnnnnaagttgaattgggattattatcgttgtagcttgc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20595888 |
ttttcccaagtgaattgtgattattatcgttggaaact---tatatggctgagaccaaatttttttaagttgaattgggattattatcgttgtagcttgc |
20595984 |
T |
|
| Q |
198 |
acctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacctattaactgttctgattcaaagctcctgtga---aataaca |
294 |
Q |
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| T |
20595985 |
acctaaggtgcttagaaaaactactgaagacactccaactgaaatataactgaagca-ctactaactgttctgatttaaagctcccgtgaaataataaca |
20596083 |
T |
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| Q |
295 |
aagtgtttgtaaatgatatcaaaagctgcatcat |
328 |
Q |
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| T |
20596084 |
aagtgtctgtaaatgatatcaaaagctgcatcat |
20596117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 12056428 - 12056341
Alignment:
| Q |
169 |
gaattgggattattatcgttgtagcttgcacctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacc |
256 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
12056428 |
gaattgtgattattatcgttgtagcttgcacctaaggcacttagacaaactactgaagacactccaaccgaaatataactgaagcacc |
12056341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 12056532 - 12056476
Alignment:
| Q |
97 |
tttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaa |
156 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12056532 |
tttttcccaaatgaattgtgattattatcgttggaa---acttatatggctgagaccaaa |
12056476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 12056320 - 12056288
Alignment:
| Q |
321 |
tgcatcatcaagcttaatgttgggagaaagata |
353 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12056320 |
tgcatcatcaagcttaatgttgggagaaagata |
12056288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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