View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1311_high_9 (Length: 353)

Name: NF1311_high_9
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1311_high_9
NF1311_high_9
[»] scaffold0101 (1 HSPs)
scaffold0101 (14-236)||(18674-18896)
[»] chr1 (5 HSPs)
chr1 (14-236)||(52004791-52005013)
chr1 (14-232)||(52539267-52539487)
chr1 (57-236)||(20010720-20010899)
chr1 (57-236)||(42872597-42872776)
chr1 (227-255)||(14620750-14620778)
[»] chr5 (4 HSPs)
chr5 (14-235)||(41992268-41992489)
chr5 (57-236)||(37369635-37369814)
chr5 (191-236)||(41020425-41020470)
chr5 (253-285)||(41991358-41991390)
[»] chr4 (11 HSPs)
chr4 (14-236)||(7199189-7199411)
chr4 (14-236)||(51470026-51470247)
chr4 (14-236)||(55681967-55682189)
chr4 (14-212)||(37517419-37517616)
chr4 (14-212)||(37521635-37521832)
chr4 (14-186)||(41055431-41055603)
chr4 (31-235)||(374919-375124)
chr4 (31-235)||(49811618-49811822)
chr4 (31-170)||(48236174-48236314)
chr4 (191-236)||(20790197-20790242)
chr4 (313-345)||(46356831-46356863)
[»] chr8 (1 HSPs)
chr8 (14-236)||(38566558-38566780)
[»] chr3 (4 HSPs)
chr3 (14-236)||(39759337-39759559)
chr3 (22-236)||(43823435-43823649)
chr3 (65-146)||(53286413-53286493)
chr3 (193-236)||(43067976-43068019)
[»] chr2 (2 HSPs)
chr2 (14-236)||(33458313-33458535)
chr2 (57-236)||(34478936-34479115)
[»] chr6 (2 HSPs)
chr6 (14-212)||(3288439-3288637)
chr6 (65-146)||(11843270-11843350)
[»] chr7 (5 HSPs)
chr7 (13-222)||(33516376-33516585)
chr7 (14-214)||(11591420-11591619)
chr7 (14-190)||(46067150-46067326)
chr7 (14-156)||(43613823-43613965)
chr7 (31-235)||(48826736-48826940)
[»] scaffold0699 (1 HSPs)
scaffold0699 (57-212)||(19-174)
[»] scaffold0368 (1 HSPs)
scaffold0368 (57-236)||(7813-7992)


Alignment Details
Target: scaffold0101 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 18896 - 18674
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| ||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18896 agatgggttctgagatgatgagaagaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 18797  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18796 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaatgcgcccgct 18697  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||    
T  18696 ttgacccgcatcgcgcccgcttt 18674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 52004791 - 52005013
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52004791 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 52004890  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52004891 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaaggaaaatctagtattttacacagggttgtcaaaagcgcccgct 52004990  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||    
T  52004991 ttgacccgcatcgcgcccgcttt 52005013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 52539487 - 52539267
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnn--gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaa 111  Q
    |||||||||||||||| |||||||||||||||||           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52539487 agatgggttctgagatgatgagaagaggagatggtatttttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaa 52539388  T
Q  112 gagtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52539387 gagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccg 52539288  T
Q  212 ctttgacccgcatcgcgcccg 232  Q
    ||||||||||||| |||||||    
T  52539287 ctttgacccgcattgcgcccg 52539267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 20010720 - 20010899
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20010720 gttggtacgatgaagaagttgagtttgtggctgtgtatttggctctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 20010819  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20010820 cggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcacgcccgcttt 20010899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 42872597 - 42872776
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42872597 gttggtacgatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaaagacccttaaaa 42872696  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
      ||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||    
T  42872697 tggttttaagtgaagggaaatcctgtattttacacagggttgtaaaaagtgcccgctttgacccacatcgtgcccgcttt 42872776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 14620778 - 14620750
Alignment:
Q  227 cgcccgctttctccaaacgctccgctttg 255  Q
    |||||||||||||||||||||||||||||    
T  14620778 cgcccgctttctccaaacgctccgctttg 14620750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 41992489 - 41992268
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    ||||||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41992489 agatgggttatgagataatgagaagaggagatggattttttttgttggtatgatgaagaagttgagtttgtggctgtgtatttggttatggtggagaaga 41992390  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41992389 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacatggttgtcaaaagcgcccgct 41992290  T
Q  214 ttgacccgcatcgcgcccgctt 235  Q
    ||||||||||| ||||||||||    
T  41992289 ttgacccgcattgcgcccgctt 41992268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 37369635 - 37369814
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37369635 gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgaccgttaaaa 37369734  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37369735 cagttttaaattaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 37369814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 41020425 - 41020470
Alignment:
Q  191 cagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  41020425 cagggttgtcaaaagcgcccgctttgacccgcatcgcacccgcttt 41020470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 41991390 - 41991358
Alignment:
Q  253 ttgaatttacgtcttttggagctctgtggtgct 285  Q
    |||||||||||||||||||||||||||||||||    
T  41991390 ttgaatttacgtcttttggagctctgtggtgct 41991358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 7199411 - 7199189
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7199411 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggaggagaaga 7199312  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7199311 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcacccgct 7199212  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||    
T  7199211 ttgacccgcatcgcgcccgcttt 7199189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 51470026 - 51470247
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| ||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51470026 agatgggttctgagatgatgagaagaggagatggatttttttt-ttggtaagatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 51470124  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51470125 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 51470224  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    ||||||| |||||||||||||||    
T  51470225 ttgacccacatcgcgcccgcttt 51470247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 55682189 - 55681967
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| ||||||  ||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55682189 agatgggttctgagatgatgagacaaggagatggatttgttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 55682090  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55682089 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 55681990  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||| ||||||||||||||||    
T  55681989 ttgacctgcatcgcgcccgcttt 55681967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 37517419 - 37517616
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  37517419 agatgggttctgagatgatgagacgaggagatggatttattttgttggtacgatgaagaagttgagtttgtggctgtgtatttggctatggtggagaaga 37517518  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  37517519 gtaatagttagggtttt-aaaattacaaaaatgacccttaaaacagttttaaattaagggaaatttagtattttacacagggttgtcaaaagcgcccgc 37517616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 37521635 - 37521832
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  37521635 agatgggttctgagatgatgagacgaggagatggatttattttgttggtacgatgaagaagttgagtttgtggctgtgtatttggctatggtggagaaga 37521734  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  37521735 gtaatagttagggtttt-aaaattacaaaaatgacccttaaaacagttttaaattaagggaaatttagtattttacacagggttgtcaaaagcgcccgc 37521832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 41055431 - 41055603
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41055431 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 41055530  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41055531 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattt 41055603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 374919 - 375124
Alignment:
Q  31 atgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggtttt 130  Q
    ||||||||||||||||||        ||||||| ||||||||||||| ||||| |||||||||||||||| || | ||||||||||||||||| ||||||    
T  374919 atgagaagaggagatggattttttttgttggtacgatgaagaagttgtgtttgaggctgtgtatttggttatgatagagaagagtaatagttatggtttt 375018  T
Q  131 gaaaattacaaaaatgacccttaaaacagttttaaatg-aagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgc 229  Q
    ||||||||||||| ||||||||||||| ||||||| || |||| |||||| ||||||||||||||||||| ||||||| |||||||||||| ||| ||||    
T  375019 gaaaattacaaaattgacccttaaaacggttttaagtgaaaggaaaatcttgtattttacacagggttgtaaaaagcgtccgctttgacccacattgcgc 375118  T
Q  230 ccgctt 235  Q
    ||||||    
T  375119 ccgctt 375124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 49811822 - 49811618
Alignment:
Q  31 atgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggtttt 130  Q
    ||||||||||||||||||        ||| ||| |||||||||||||  ||||  | |||||||||||||||| |||||||||||| ||||||  |||||    
T  49811822 atgagaagaggagatggattttttttgtttgtacgatgaagaagttgtttttgcagttgtgtatttggttctgatggagaagagta-tagttaacgtttt 49811724  T
Q  131 gaaaattacaaaaa-tgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgc 229  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||||||  || ||||||| ||||||| |||| ||||||||    
T  49811723 gaaaattacaaaaaatgacccttaaaacggttttaagtgaagggcaatcttgtattttacacaggggagtaaaaagcgtccgctttaacccacatcgcgc 49811624  T
Q  230 ccgctt 235  Q
    ||||||    
T  49811623 ccgctt 49811618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 48236314 - 48236174
Alignment:
Q  31 atgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggtttt 130  Q
    ||||||||||||||||||        ||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  48236314 atgagaagaggagatggattttttttgtttgtatgatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggtttt 48236215  T
Q  131 gaaaattaca-aaaatgacccttaaaacagttttaaatgaa 170  Q
    |||||||||| ||||||||||||||||| | ||||| ||||    
T  48236214 gaaaattacaaaaaatgacccttaaaacgggtttaagtgaa 48236174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 20790242 - 20790197
Alignment:
Q  191 cagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  20790242 cagggttgtcaaaagcgcccgctttgacccgcatcgcgtccgcttt 20790197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 46356831 - 46356863
Alignment:
Q  313 tctgattctctcaactccacctacgttcatctc 345  Q
    |||||||||||||||||||||||||||| ||||    
T  46356831 tctgattctctcaactccacctacgttcttctc 46356863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 38566780 - 38566558
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  38566780 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacggtgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 38566681  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  38566680 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggtgntcaaaagcgcccgct 38566581  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||    
T  38566580 ttgacccgcatcgcgcccgcttt 38566558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 39759559 - 39759337
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39759559 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 39759460  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  39759459 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtatttcacacagggttgtcaaaagcgcccact 39759360  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    ||||||||||| |||||||||||    
T  39759359 ttgacccgcattgcgcccgcttt 39759337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 43823435 - 43823649
Alignment:
Q  22 tctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagt 121  Q
    |||||||| |||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43823435 tctgagatgatgagacgaggagatggattttttttgttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagt 43823534  T
Q  122 tagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccg 221  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43823535 tagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaagggaaatctagtaatttacacagggttgtcaaaagcgcccgctttgacccg 43823634  T
Q  222 catcgcgcccgcttt 236  Q
    |||||||||||||||    
T  43823635 catcgcgcccgcttt 43823649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 53286413 - 53286493
Alignment:
Q  65 gatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatg 146  Q
    ||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  53286413 gatgaagaagttgcgtttgcagctgtgtatttggttctgatggagaagagtaatagtta-ggttttgaaaattacaaaaatg 53286493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 43068019 - 43067976
Alignment:
Q  193 gggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43068019 gggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 43067976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 33458313 - 33458535
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33458313 agatgggttctgagatgatgagacgaggagatggattttttttgttgatacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 33458412  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33458413 gtaatagtcagggttttgaaaattacaaaaatgaccctcaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 33458512  T
Q  214 ttgacccgcatcgcgcccgcttt 236  Q
    |||||||||||||||||||||||    
T  33458513 ttgacccgcatcgcgcccgcttt 33458535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 34478936 - 34479115
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34478936 gttggtaagatgaagaagttgagtttgtggatgtgtatttgattccggtggagaagagtaataggtagggttttgaaaattacaaaaatgacccttaaaa 34479035  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  34479036 cggttttaaatgaagggaaatctaatattttacacagggttgtcaaaagtgcccgctttgacccgcatcgctcccgcttt 34479115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 3288439 - 3288637
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3288439 agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 3288538  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3288539 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 3288637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 11843350 - 11843270
Alignment:
Q  65 gatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatg 146  Q
    ||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  11843350 gatgaagaagttgtgtttgcagctgtgtatttggttctgatggagaagagtaatagtta-ggttttaaaaattacaaaaatg 11843270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 33516376 - 33516585
Alignment:
Q  13 gagatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaag 112  Q
    ||||||||||||||||| |||||| |||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33516376 gagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaag 33516475  T
Q  113 agtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  33516476 agtaatagttagggttttgaaaattaccaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgctaaaagcgcccgc 33516575  T
Q  213 tttgacccgc 222  Q
    ||||||||||    
T  33516576 tttgacccgc 33516585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 11591619 - 11591420
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| ||||||||| |        ||||| | || ||||||||||||| |||||||||||||||||||||| |||||||||    
T  11591619 agatgggttctgagatgatgagacgaggagatgaattttttttgttggaacgaagaagaagttgagtctgtggctgtgtatttggttctg-tggagaaga 11591521  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11591520 gtaatagttagggttttaaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgct 11591421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 46067150 - 46067326
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||||||||||||| |||||| |||||||||||        |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46067150 agatgggttctgagatgatgagacgaggagatggattttttttgttgataagatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 46067249  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttaca 190  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  46067250 gtaatagttagggttttgaaaattacaaaaatgacacttaaaacggttttaaatgatgggaaatctagtattttaca 46067326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 43613965 - 43613823
Alignment:
Q  14 agatgggttctgagataatgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 113  Q
    |||||| ||||||||| |||||| |||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43613965 agatggattctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga 43613866  T
Q  114 gtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43613865 gtaatagttagggttttgaaaattacaaaaatgacccttaaaa 43613823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 48826940 - 48826736
Alignment:
Q  31 atgagaagaggagatggannnnnnnngttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggtttt 130  Q
    ||||||||||||||||||        ||| ||| |||||||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  48826940 atgagaagaggagatggatttttgttgtttgtacgatgaagaagttgtatttgcggctgtgtatttggttctgatggagaagagtaatagttagggtttt 48826841  T
Q  131 gaaaattacaaaaatgacccttaaaacagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgc-atcgcgc 229  Q
    ||||||||||||||||| | ||||||| ||||||| ||||||| | ||  |||||||||| ||||  || |||||| ||||||||||||||| || ||||    
T  48826840 gaaaattacaaaaatga-ctttaaaacggttttaagtgaagggcagtcccgtattttacataggggagtaaaaagcacccgctttgacccgcaattgcgc 48826742  T
Q  230 ccgctt 235  Q
    ||||||    
T  48826741 ccgctt 48826736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 19 - 174
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19 gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 118  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgc 212  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  119 tggttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcggccgc 174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 7992 - 7813
Alignment:
Q  57 gttggtatgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa 156  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || | |||    
T  7992 gttggtacgatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaaagaacccttaaa 7893  T
Q  157 cagttttaaatgaagggaaatctagtattttacacagggttgtcaaaagcgcccgctttgacccgcatcgcgcccgcttt 236  Q
      ||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||    
T  7892 tggttttaagtgaagggaaatcctgtattttacacagggttgtaaaaagtgcccgctttgacccacatcgtgcccgcttt 7813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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