View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_1 (Length: 853)
Name: NF1311_low_1
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_1 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Complemental strand, 33701668 - 33700876
Alignment:
| Q |
1 |
tttctctttctatagtcacaatctatgcaactaaacagatcctaatccaaaattgaacaagatcaaaatgctatagaatagaaattctaaacaccaagac |
100 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33701668 |
tttctctttctatagtcacaatctatgcaacgaaacccatcctaatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaagac |
33701569 |
T |
|
| Q |
101 |
atataaagcacgagaaacatgaggaggatgaagaagtacactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacaataagaagatt |
200 |
Q |
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||||||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33701568 |
atataaaacactagaaacatgagcaggacgaagaagtatactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacgataagaagatt |
33701469 |
T |
|
| Q |
201 |
tacttataaaacacccttatgctgcaactgtttagacccaaaaatgaaatgtatattatgcgatctccacttagtttataaaagtggttatggtatgtaa |
300 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
33701468 |
tacttataaaagacccttgtgctgcaactgtttagacccaaaaatgaaatgtatattatgctatctccacttagtttataaaagtggttatagtatgtaa |
33701369 |
T |
|
| Q |
301 |
taacttttggtgcattggttctcgaaagtatccgacatttggaaaaactaaattttaaattttcatatgttggtatttttgaagatcaatctactaaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33701368 |
taacttttggtgcattggttctcgaaagtatccgacatttggaaaaactaaattttaaattttcatatgttggtatttttgaagatcaatctactaaaat |
33701269 |
T |
|
| Q |
401 |
----ggagtttctaaatttattttttcttttgtcgaatagaaaggaaaatgtttgatatacatcttggtataaagagaaaaaac--tgtgacgaggtaga |
494 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33701268 |
aaatggagtttctaaatttattttttcttttgttgaatagaaaggaaaatgtttgatatacatcttggtataaagagaaaaaacagtgtgacgaggtaga |
33701169 |
T |
|
| Q |
495 |
tataataggttggtataatgtgacatgaaggaagaaatatagagaaaatgaaacgttgaatgtttaataagttgcttatatagtcatgcatgactattta |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33701168 |
tataataggttggtataatgtgacatgaaggaagaaatatagataaaatgaaacgttgaatgtttaataggttgcttatatagtcatgcatgactattta |
33701069 |
T |
|
| Q |
595 |
agcaaaa---------cnnnnnnnnnnnnnngggttgaaaaataaatttaacaaggtctcattccttctaaggagatattgtctatgagatacgaacata |
685 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33701068 |
agcaaaactattttttctgttttttttttttgggttgaaaaataaatttaacaaggtctcattccttctaaggagatattgtctatgagatacgaacatg |
33700969 |
T |
|
| Q |
686 |
gacattagacacacaaacatgaatgtaaatacatgtgtcggtgtcgtgtttaagccacgctcttgttgtcttttgcttgagactttttgcctatga |
781 |
Q |
| |
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|| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
33700968 |
gagac---acacacaaacatgaatgtaaacacatgtgtcagtgtcgtgtttaagccacgttcttgttgtcttttgcttgagagtttttgcctatga |
33700876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 21311200 - 21311092
Alignment:
| Q |
139 |
cactctggattttggtctgaacagtcccacatcaatagtgcttaaacaacaat-aagaagatttacttataaaacacccttatgctgcaactgtttagac |
237 |
Q |
| |
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|||||| ||||||||| |||||||||||| || || || ||||| |||||| ||||||| |||||||||||| ||||| |||| ||| |||||||| |
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| T |
21311200 |
cactctagattttggtttgaacagtcccatattgatggtacttaaccaacaaagaagaagacttacttataaaaggcccttgtgctctaacagtttagac |
21311101 |
T |
|
| Q |
238 |
ccaaaaatg |
246 |
Q |
| |
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|||| |||| |
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|
| T |
21311100 |
ccaataatg |
21311092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 12672 - 12590
Alignment:
| Q |
142 |
tctggattttggtctgaacagtcccacatcaatagtgcttaaacaa-caataagaagatttacttataaaacacccttatgct |
223 |
Q |
| |
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|||||||||| | |||| |||||||||| || |||||||||||| ||| | |||||||||||||||||| |||||| |||| |
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| T |
12672 |
tctggatttttatttgaatagtcccacatggatggtgcttaaacaatcaagaggaagatttacttataaaagacccttgtgct |
12590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 738
Target Start/End: Original strand, 23851496 - 23851529
Alignment:
| Q |
705 |
tgaatgtaaatacatgtgtcggtgtcgtgtttaa |
738 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
23851496 |
tgaatgtaaacacatgtgtcggtgtcgtgtttaa |
23851529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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