View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1311_low_10 (Length: 412)

Name: NF1311_low_10
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1311_low_10
NF1311_low_10
[»] chr7 (17 HSPs)
chr7 (30-404)||(20302194-20302568)
chr7 (34-405)||(20063857-20064213)
chr7 (31-362)||(20230075-20230406)
chr7 (31-367)||(20293029-20293365)
chr7 (67-362)||(20300163-20300458)
chr7 (34-338)||(20169383-20169687)
chr7 (31-362)||(20272227-20272558)
chr7 (34-366)||(20287659-20287994)
chr7 (124-323)||(20242064-20242263)
chr7 (123-207)||(20090480-20090564)
chr7 (63-363)||(20277970-20278270)
chr7 (184-359)||(20262661-20262836)
chr7 (221-366)||(20006889-20007034)
chr7 (312-362)||(20282549-20282599)
chr7 (220-296)||(19937491-19937567)
chr7 (220-296)||(19968630-19968706)
chr7 (220-296)||(47602093-47602169)
[»] chr4 (2 HSPs)
chr4 (123-367)||(40825236-40825480)
chr4 (31-361)||(40820476-40820806)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 20302568 - 20302194
Alignment:
Q  30 gcagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaa 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||  ||||||  ||   |||||||    
T  20302568 gcagccaatcccagcatcgttggagtatgcagtgcaagagcaattctccaagcataagcttctgcatatatctggtgtaacagctacaccttctgcaaaa 20302469  T
Q  130 tcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacac 229  Q
    || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20302468 tcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacac 20302369  T
Q  230 acccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgc 329  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20302368 acccactagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacaaattgc 20302269  T
Q  330 aaatgccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20302268 aaatgccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctc 20302194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 34 - 405
Target Start/End: Original strand, 20063857 - 20064213
Alignment:
Q  34 ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag 133  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20063857 ccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag 20063956  T
Q  134 gaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacaccc 233  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||| | |               ||||||| | ||| ||| | ||||||||||||||    
T  20063957 gaactttaaccatcttcaatttcaaaaacccatcttcttttgtactttttg---------------tttcacatttcaatgatgtcctcctaacacaccc 20064041  T
Q  234 attagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaat 333  Q
    |   ||||| |||||||||||||||||||||||| |  | || ||||| ||||||||||||||||| | ||| ||| |||||||| ||||  ||||||||    
T  20064042 acctgtccagttgtttctattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgcaaat 20064141  T
Q  334 gccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctca 405  Q
    ||||| ||  ||||||| ||||||||||| |||||  |||||||  || |||||| ||||||||||| ||||    
T  20064142 gccccacatgtaccatatacatcacactctgattttcggctagtccatgtaacttgcacttctttctcctca 20064213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 20230406 - 20230075
Alignment:
Q  31 cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat 130  Q
    |||||||||||| |||| | ||| || |||   ||||||||||||||||| |||||  |||||||| |||| |||||| |  |||  ||    |||||||    
T  20230406 cagccaatcccatcatcatgagaatacgcaacacaagagcaattctccaaacataagattctgcatctgtcaggtgtcccttctaaaccttcagcaaaat 20230307  T
Q  131 caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca 230  Q
    | |||||||||||||| || | |||||||||||| ||||||||| ||| |||||||||||||  || ||||| ||||||||| | | | | |||||||||    
T  20230306 ctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttacactgcaatggtttccgcctaacaca 20230207  T
Q  231 cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca 330  Q
    |||   |||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |    
T  20230206 cccgccagtccagttgtttctattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgta 20230107  T
Q  331 aatgccccgcaaataccataaacatcacactc 362  Q
    |||||||| || | ||||||||||||||||||    
T  20230106 aatgccccacatagaccataaacatcacactc 20230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 31 - 367
Target Start/End: Complemental strand, 20293365 - 20293029
Alignment:
Q  31 cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat 130  Q
    ||||||||||||| ||| | ||| || ||| |||| |||||||| | ||| ||||| ||||||||||| || |||||  ||||||  ||   ||||||||    
T  20293365 cagccaatcccagaatcatgagaatacgcaatgcaggagcaattatgcaaacataagcttctgcatatttctggtgtaacagctacaccttctgcaaaat 20293266  T
Q  131 caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca 230  Q
    | |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | | |||||||||||    
T  20293265 ctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacaca 20293166  T
Q  231 cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca 330  Q
    ||||   |||||||| | | || ||||||| | ||||||  | ||  |||| ||| |||||||||| || | ||| | |||||||||| ||||  |||||    
T  20293165 cccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgca 20293066  T
Q  331 aatgccccgcaaataccataaacatcacactccgatt 367  Q
    || ||||| || |||||||||||||||||||| ||||    
T  20293065 aaggccccacatataccataaacatcacactctgatt 20293029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 67 - 362
Target Start/End: Complemental strand, 20300458 - 20300163
Alignment:
Q  67 gagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccat 166  Q
    |||||||||| ||||||||| |||||||||||||| ||||   ||||||  ||   |||||| ||||||||||||||||| |||||| ||||||| ||||    
T  20300458 gagcaattctacaagcataagcttctgcatatgtctggtgcaacagctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccat 20300359  T
Q  167 cttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcctgtat 266  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||| | | ||||| |||||||||  |||||||||||||||||||||||| |||||    
T  20300358 cttcctttgtactggtggttttattgttgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccattcttgtat 20300259  T
Q  267 gttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc 362  Q
         | || |||||  ||||||||||| |||||| ||| |  || | |||| ||||  |||||||| ||||||| ||||||||| ||||||||||    
T  20300258 cgacttgggttcaaattctttcaaacaggtgcaaattggtgaacttagtgaactacagcttgcaaataccccgcatataccataaccatcacactc 20300163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 338
Target Start/End: Original strand, 20169383 - 20169687
Alignment:
Q  34 ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag 133  Q
    ||||||||| |||| | ||| ||||||  |||||||||||||||||||||||  |||||||||||||| | |||  |||  |  ||    |||||||| |    
T  20169383 ccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtctgatgtaacagtcaaaccttcagcaaaatctg 20169482  T
Q  134 gaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacaccc 233  Q
    ||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | |||||||||    
T  20169483 gaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacaccc 20169582  T
Q  234 attagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaat 333  Q
    |   ||||| || | | |||||||||  | ||||||  | || ||||||||| |||||||||| ||   ||| | |||||||||||||||| ||||||||    
T  20169583 accggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaat 20169682  T
Q  334 gcccc 338  Q
    |||||    
T  20169683 gcccc 20169687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 20272558 - 20272227
Alignment:
Q  31 cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat 130  Q
    |||||||||||| |||| | ||| ||||||  |||||||||||||||||||||||  |||||||||||||| |||||  |   ||  ||    |||||||    
T  20272558 cagccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtcaggtgtaacgattaaaccttcagcaaaat 20272459  T
Q  131 caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca 230  Q
    | |||||||||| | | || | |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |  ||||||||||    
T  20272458 ctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggtgtcttcctaacaca 20272359  T
Q  231 cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca 330  Q
    ||||  || ||| |||||| | ||||||||  |||| ||  | || ||||| ||||||| ||||||||| | ||| | | || ||||| |||| ||||||    
T  20272358 cccaccagaccagttgtttattttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatgaactacagattgca 20272259  T
Q  331 aatgccccgcaaataccataaacatcacactc 362  Q
    ||||| || || ||||||||||||||||||||    
T  20272258 aatgcgccacatataccataaacatcacactc 20272227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 366
Target Start/End: Complemental strand, 20287994 - 20287659
Alignment:
Q  34 ccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcag 133  Q
    |||||||||||   || ||| |||||| |||||||||||||||| ||||||   ||||| |||||||| |||||    |||   ||   |||||||||||    
T  20287994 ccaatcccagcggtgtgagaatatgcaatgcaagagcaattctctaagcatcggcttctacatatgtctggtgtaagtgctgaaccttgtgcaaaatcag 20287895  T
Q  134 gaactttaaccatgtgcaatttcaaaaacccatcttcctt---tgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca 230  Q
    ||||||||||||| | |||||||||||| |||||||||||   |||||||||||| ||||| |||||||||||||||||||||  | | || ||||||||    
T  20287894 gaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttcacactgcaaaagtatccttctaacaca 20287795  T
Q  231 cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca 330  Q
    ||||  |||||| |||| ||||||||| |||||| ||||  | || ||||| ||| ||||||| ||||| | |||     |||||||| ||||  ||||     
T  20287794 cccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttcaatgaactacagcttgcg 20287695  T
Q  331 aatgccccgcaaataccataaacatcacactccgat 366  Q
    |||||||| || ||||||||||  ||||| ||||||    
T  20287694 aatgccccacatataccataaatgtcacattccgat 20287659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 323
Target Start/End: Complemental strand, 20242263 - 20242064
Alignment:
Q  124 gcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcc 223  Q
    |||||||| |||||||||||||| || | ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| |||   ||    
T  20242263 gcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacccttttacacagcaaaggtctctgcc 20242164  T
Q  224 taacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattaca 323  Q
    ||||||||||   |||||| ||||||||| |||||||  |  | ||  | || ||||| ||||||||||| ||||||| ||| | |||||||||||||||    
T  20242163 taacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactggtgagctcaatgaattaca 20242064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 20090480 - 20090564
Alignment:
Q  123 tgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacac 207  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||| ||||    
T  20090480 tgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacac 20090564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 363
Target Start/End: Complemental strand, 20278270 - 20277970
Alignment:
Q  63 gcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatgtgcaatttcaaaaac 162  Q
    |||||| ||||||||||||||||  |||||||| ||||| |||||  ||||||   |    |||||| | || ||||| ||| | || ||||||||||||    
T  20278270 gcaagaacaattctccaagcataggcttctgcaaatgtctggtgtaacagctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaac 20278171  T
Q  163 ccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcct 262  Q
     ||||||||||| | | |||||||||||||||  ||||   |||||||||||   |||||||||||||||||   ||||| || | || ||||||||| |    
T  20278170 gcatcttcctttctccgtgtggttttattgttatccctactacactgcaaagtggttctcctaacacacccaccggtccagttatgtccattccattctt 20278071  T
Q  263 gtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc 362  Q
    |||||||  | || ||||| ||| ||| |||| | || | ||| | |  ||||||| ||||  ||||||||||||| || ||||| ||||||||||||||    
T  20278070 gtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaactacagcttgcaaatgccccacatataccgtaaacatcacactc 20277971  T
Q  363 c 363  Q
    |    
T  20277970 c 20277970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 20262836 - 20262661
Alignment:
Q  184 gttttattgttgaccctttcacactgcaaagatcttctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaacc 283  Q
    ||||||||| ||| ||||||||||||||||| ||| | ||||||||||||   |||||| ||||||||| |||||||  |  | ||  | || ||||| |    
T  20262836 gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc 20262737  T
Q  284 ctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcaca 359  Q
    |||||||||| ||||| |  || | |||||||||||||||  ||| |||| | || || | |||||||||||||||    
T  20262736 ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcaca 20262661  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 20006889 - 20007034
Alignment:
Q  221 tcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaatt 320  Q
    |||||||||| |||||||||||||| | ||||||||| || ||  ||||  |||| |||||||||| |||||| || |||| |||||  |    ||||||    
T  20006889 tcctaacacatccattagtccaattttgtctattccactcttgattgtttcttggttcaaacccttccaaacacctacaaattggcgacccttttgaatt 20006988  T
Q  321 acaaattgcaaatgccccgcaaataccataaacatcacactccgat 366  Q
    ||||||| ||||||  || |||| |||||||| |||||| ||||||    
T  20006989 acaaattccaaatgaaccacaaaaaccataaagatcacaatccgat 20007034  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 20282599 - 20282549
Alignment:
Q  312 caatgaattacaaattgcaaatgccccgcaaataccataaacatcacactc 362  Q
    ||||||||||||  ||||||||||||| || ||||||||| ||||||||||    
T  20282599 caatgaattacagcttgcaaatgccccacatataccataagcatcacactc 20282549  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 19937567 - 19937491
Alignment:
Q  220 ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct 296  Q
    ||||||||||| || |  |||||||| | | |||||||||||| | ||||  |||| ||||||||||||||||||||    
T  19937567 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagct 19937491  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 19968706 - 19968630
Alignment:
Q  220 ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct 296  Q
    ||||||||||| || |  |||||||| | | |||||||||||| | ||||  |||| ||||||||||||||||||||    
T  19968706 ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagct 19968630  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 47602093 - 47602169
Alignment:
Q  220 ctcctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagct 296  Q
    |||||||||||||||  |||||| || | ||||||||||| || | ||||  |||| ||||||||||||||| ||||    
T  47602093 ctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagct 47602169  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 367
Target Start/End: Original strand, 40825236 - 40825480
Alignment:
Q  123 tgcaaaatcaggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctc 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||  | | ||     
T  40825236 tgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacactgcaaaagtgtcctt 40825335  T
Q  223 ctaacacacccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattac 322  Q
    ||||||||||||   ||||| |||| ||||||||| |||||| ||||  | || ||||| ||| ||||||| ||||| |  ||     |||||||| |||    
T  40825336 ctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactac 40825435  T
Q  323 aaattgcaaatgccccgcaaataccataaacatcacactccgatt 367  Q
    |  ||| ||||||||| || ||||||||||| ||||| |||||||    
T  40825436 agcttgaaaatgccccacatataccataaacgtcacattccgatt 40825480  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 361
Target Start/End: Original strand, 40820476 - 40820806
Alignment:
Q  31 cagccaatcccagcatcgttagagtatgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctcagctattccacttgcaaaat 130  Q
    ||||||||||||| ||| | ||| || |||  ||| |||||||| | ||  ||||| |||||||||||||| |||||  ||||||  ||   |||||| |    
T  40820476 cagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcagacataagcttctgcatatgtctggtgtaacagctacaccttctgcaaatt 40820575  T
Q  131 caggaactttaaccatgtgcaatttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacaca 230  Q
    | | ||||| ||||   ||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| ||||| | | |||||||||||    
T  40820576 ctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacaca 40820675  T
Q  231 cccattagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaagtggcgtgctcaatgaattacaaattgca 330  Q
    || |   |||||||| | | || ||||||| | ||||||  | ||  |||| ||| | |||||||| || | ||||| ||||||| || ||||  |||||    
T  40820676 ccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgca 40820775  T
Q  331 aatgccccgcaaataccataaacatcacact 361  Q
    |||||  | || |||||||||||||||||||    
T  40820776 aatgctgcacatataccataaacatcacact 40820806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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