View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_12 (Length: 358)
Name: NF1311_low_12
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 31 - 358
Target Start/End: Original strand, 45367328 - 45367659
Alignment:
| Q |
31 |
tagtctaatagtagtagtatgaagtggttaaaggaaacaaaatatctagctatgattgtgagtgaatctgagagtgagtttgtttgtggaactcaagaag |
130 |
Q |
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| T |
45367328 |
tagtctaatagtagtagtttgaagtggttaaaggaaacaaaatatctagctatgattgtgagtgaatctgagagtgagtttgtttgtggaactcaagaag |
45367427 |
T |
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| Q |
131 |
atcaaaaacacattcacactgaactgaatcttcataccaacaaaaacatgaccatgcaaatgttccattccaaccttaattaa----cagttgtctgaaa |
226 |
Q |
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| T |
45367428 |
atcaaaaacacattcacactgaactgaatcttcataccaacaaaaacatgaccatgcaaatgttccattccaaccttaattaacagtcagttgtctgaaa |
45367527 |
T |
|
| Q |
227 |
acatagttgtctgtgttggaagtcactgtctccactttaacaacactcttcttctcatcccaacaacaaattcatcactttcactcacatattcatatta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45367528 |
acatagttgtctgtgttggaagtcactgtctccactttaacaacactcttcttctcatcccaacaacaaattcatcactttcactcacatattcatatta |
45367627 |
T |
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| Q |
327 |
ataccattttcagttacattttctctctctct |
358 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45367628 |
ataccattttcagttacattttctctctctct |
45367659 |
T |
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