View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_15 (Length: 347)
Name: NF1311_low_15
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 43240963 - 43240730
Alignment:
| Q |
66 |
acaaagaccacgatgtccattgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttattatttttgca |
165 |
Q |
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| T |
43240963 |
acaaagaccacgatgtccattgaatataatacgggagacatttatttaagatcatcgaaaaagccaatgtagatatgataaggcatttataatttttgca |
43240864 |
T |
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| Q |
166 |
gccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgacttaataattaatgatggta |
265 |
Q |
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| T |
43240863 |
gccaattcaacaatcatggaatttcctaatgaagtgtagtaatgttgtctagtttacaatcataaaagtgtataatctgacttaataattaatgatggta |
43240764 |
T |
|
| Q |
266 |
caatagagatgaatagccgaaattccgcaagtat |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43240763 |
caatagagatgaatagccgaaattccgcaagtat |
43240730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 299
Target Start/End: Original strand, 38927688 - 38927834
Alignment:
| Q |
150 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
249 |
Q |
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| T |
38927688 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
38927785 |
T |
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| Q |
250 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtat |
299 |
Q |
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| T |
38927786 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaagtat |
38927834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 43230225 - 43230152
Alignment:
| Q |
84 |
attgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttatta |
157 |
Q |
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| T |
43230225 |
attgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttatta |
43230152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 43246929 - 43246892
Alignment:
| Q |
120 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
157 |
Q |
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| T |
43246929 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43246892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 43253394 - 43253357
Alignment:
| Q |
120 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
157 |
Q |
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| T |
43253394 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43253357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 299
Target Start/End: Original strand, 3570745 - 3570891
Alignment:
| Q |
150 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
249 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
3570745 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
3570842 |
T |
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| Q |
250 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtat |
299 |
Q |
| |
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| T |
3570843 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaagtat |
3570891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 299
Target Start/End: Original strand, 46354114 - 46354260
Alignment:
| Q |
150 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
249 |
Q |
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|||||||||| ||||| |||||||||| |||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||| |
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| T |
46354114 |
atttattattgttgcatccaattcaacgatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgattta |
46354211 |
T |
|
| Q |
250 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtat |
299 |
Q |
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| T |
46354212 |
aaaattaatgat-gtacaatagagaaaaatagctgaaattctgcaagtat |
46354260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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