View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_21 (Length: 277)
Name: NF1311_low_21
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_21 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 34694486 - 34694303
Alignment:
| Q |
56 |
atagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaaaaaatatttg |
155 |
Q |
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| T |
34694486 |
atagatggcttcaagaatgtggatttgctcaggttttgggatccatcttggccttggtccaggagttatttcttcatcatctccacctaaaaaatatttg |
34694387 |
T |
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| Q |
156 |
tcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaagatattcattacactgtatgaaccatggagtat |
239 |
Q |
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| T |
34694386 |
tcgtaagccgatcaaacatgcaaagtttacaaattataaaattgaccgaaagatattcattacattgtatgaaccatggagtat |
34694303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 34686553 - 34686382
Alignment:
| Q |
57 |
tagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaaaaaatatttgt |
156 |
Q |
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| T |
34686553 |
tagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggccttggtccaggatttctatcttcatcg------cctaaacaatatttgt |
34686460 |
T |
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| Q |
157 |
cgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaagatattcattacactgtatgaaccatgg |
234 |
Q |
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| T |
34686459 |
tataagccgatcaaacatgcaaagtttacaaattattaaattgaccaaaatatatgcattacactctatgaagcatgg |
34686382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 8284408 - 8284229
Alignment:
| Q |
60 |
atggcttgaagaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgt |
159 |
Q |
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| T |
8284408 |
atggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttcgccatctccacctaaacaatatttgttat |
8284309 |
T |
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| Q |
160 |
aagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaagatattcattacactgtatgaaccatggagtat |
239 |
Q |
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| T |
8284308 |
aagtcaatcgaacatgctaagtttacaaattctaaaatttactaatagatgttcattatattgtataaactagggagtat |
8284229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 5709 - 5623
Alignment:
| Q |
69 |
agaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaaaaaatatttgt |
156 |
Q |
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| T |
5709 |
agaatgcggatttgctcaagctttggattccatcttgg-ctttgttgagaagttctctcttcagcatctccacctaaacaatatttgt |
5623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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