View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_3 (Length: 625)
Name: NF1311_low_3
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 29 - 615
Target Start/End: Complemental strand, 48101757 - 48101168
Alignment:
| Q |
29 |
aacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactattagtcttgattgcagttctt |
128 |
Q |
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| T |
48101757 |
aacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactattagtcttgattgcagttgtt |
48101658 |
T |
|
| Q |
129 |
gtcctctatttttaccggctcacataattgatttttcgcgttttaaatccaattttttgttcctcaattatatttttgaatcaaaaaatgacgtggcaag |
228 |
Q |
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| T |
48101657 |
gtcctctatttttatcagctcacgaaattgatttttcgtgttttaaatccaattctttgttcctcaattatattttttaatcaaaaaatgacgtggcaag |
48101558 |
T |
|
| Q |
229 |
cttttttattgtcatagtatagaactct--atattataaatccacttgaatgattccaaatcaagtgttttatgtcaataaaaatttgtcaaatgctcca |
326 |
Q |
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| T |
48101557 |
tttttttattgtcatagtatagaactctgtatattataaatccacttgaatgattccaaatcaagtgttttatgtcaataaaaatttgtcaaatgctcca |
48101458 |
T |
|
| Q |
327 |
ga-ttcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcatta |
425 |
Q |
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| T |
48101457 |
gaattcttagacattgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcatta |
48101358 |
T |
|
| Q |
426 |
cagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgt |
525 |
Q |
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| T |
48101357 |
cagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgt |
48101258 |
T |
|
| Q |
526 |
tgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
615 |
Q |
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| T |
48101257 |
tgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaacctatg |
48101168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 376 - 610
Target Start/End: Complemental strand, 48064154 - 48063920
Alignment:
| Q |
376 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||| |||||||||| |
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| T |
48064154 |
aaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttgga |
48064055 |
T |
|
| Q |
476 |
aatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
575 |
Q |
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| T |
48064054 |
aatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaac |
48063955 |
T |
|
| Q |
576 |
tgaagaaaggaatgatatatactttttctggtaac |
610 |
Q |
| |
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| T |
48063954 |
tgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 380 - 615
Target Start/End: Complemental strand, 48068806 - 48068571
Alignment:
| Q |
380 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatg |
479 |
Q |
| |
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|||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| ||||||| ||| |
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| T |
48068806 |
cagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatg |
48068707 |
T |
|
| Q |
480 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
579 |
Q |
| |
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| T |
48068706 |
gaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactgga |
48068607 |
T |
|
| Q |
580 |
gaaaggaatgatatatactttttctggtaacctatg |
615 |
Q |
| |
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| T |
48068606 |
gaaagaaatgatatatattttttctggtaacctatg |
48068571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 328 - 610
Target Start/End: Complemental strand, 48107871 - 48107589
Alignment:
| Q |
328 |
attcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
427 |
Q |
| |
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||||||| |||||||| ||| || ||| |||| |||||||| || ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | |
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| T |
48107871 |
attcttaaacattgcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattata |
48107772 |
T |
|
| Q |
428 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttg |
527 |
Q |
| |
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|||||| | |||||||||||||||||| | || |||| ||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
48107771 |
gtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttg |
48107672 |
T |
|
| Q |
528 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaac |
610 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||||| | ||| || || |||||||| |||||||||||||||| |||||| |
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| T |
48107671 |
ccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaac |
48107589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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